Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR625-201ENST00000385047 85 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 RNU2-28P-201ENST00000410457 189 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 MTCO3P12-201ENST00000416718 547 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
COL5A3P25940 UBE2FP3-201ENST00000436366 524 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 MTND2P19-201ENST00000449129 1012 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 OFD1P3Y-201ENST00000453312 783 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC1.62□□□□□ -2.15
COL5A3P25940 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.62□□□□□ -2.15
COL5A3P25940 AP001372.4-201ENST00000524889 472 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AL512347.1-201ENST00000566420 503 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AP001269.3-201ENST00000588718 329 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AC011712.1-201ENST00000588959 234 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.62□□□□□ -2.15
COL5A3P25940 AC004987.4-201ENST00000603383 338 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.62□□□□□ -2.15
COL5A3P25940 AC027449.1-201ENST00000608890 407 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 PART1_2.1-201ENST00000612397 250 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 MIR6788-201ENST00000618842 66 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.62□□□□□ -2.15
COL5A3P25940 AC109809.1-201ENST00000619665 545 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 CENPCP1-201ENST00000533085 2578 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 AC099786.3-201ENST00000565735 1410 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 RNU6-374P-201ENST00000364146 108 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 RNU4-41P-201ENST00000364426 143 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 RNU6-339P-201ENST00000384310 107 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 SNORA40.2-201ENST00000390847 128 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 SNORD65.1-201ENST00000390889 71 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AL033519.2-201ENST00000403958 392 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 RNU2-47P-201ENST00000410649 186 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 RPS15AP38-201ENST00000413110 372 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 MTCO2P21-201ENST00000419780 677 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC233728.2-201ENST00000425348 757 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC1.61□□□□□ -2.15
COL5A3P25940 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.61□□□□□ -2.15
COL5A3P25940 EEF1A1P39-201ENST00000440791 250 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.61□□□□□ -2.15
COL5A3P25940 snoU109.4-201ENST00000458953 143 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC005410.1-202ENST00000460347 485 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.61□□□□□ -2.15
COL5A3P25940 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.61□□□□□ -2.15
COL5A3P25940 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
COL5A3P25940 RNU6-202P-201ENST00000515998 96 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.61□□□□□ -2.15
COL5A3P25940 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.61□□□□□ -2.15
COL5A3P25940 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.61□□□□□ -2.15
COL5A3P25940 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.61□□□□□ -2.15
COL5A3P25940 MIR4285-201ENST00000581001 85 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC005730.3-201ENST00000583067 366 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC015688.2-201ENST00000584523 262 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 MIR4760-201ENST00000585040 80 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.61□□□□□ -2.15
COL5A3P25940 BNIP3P24-201ENST00000593398 557 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 VN1R83P-201ENST00000595685 445 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 MTND3P19-201ENST00000603825 345 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AL391646.1-201ENST00000603860 190 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AP001330.4-201ENST00000604350 154 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC097478.2-201ENST00000610572 514 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 AC073968.1-201ENST00000618594 637 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.61□□□□□ -2.15
COL5A3P25940 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
COL5A3P25940 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
COL5A3P25940 AC107982.1-201ENST00000507171 1300 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
COL5A3P25940 ZNF519P1-201ENST00000449011 1626 ntBASIC1.61□□□□□ -2.15
COL5A3P25940 RNU6-839P-201ENST00000363347 108 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 RNU4-72P-201ENST00000410754 173 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 TIMM9P2-201ENST00000419324 266 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
COL5A3P25940 PTENP1-201ENST00000447117 1215 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 RPL39P6-201ENST00000448289 150 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 RPL18AP17-201ENST00000455326 198 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 AC092757.1-201ENST00000467293 467 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC116353.3-201ENST00000511215 249 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.6□□□□□ -2.15
COL5A3P25940 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC069304.2-201ENST00000605154 435 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.6□□□□□ -2.15
COL5A3P25940 AC079395.3-201ENST00000615161 484 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 AC011330.2-201ENST00000621680 635 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
COL5A3P25940 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
COL5A3P25940 RNU6-1074P-201ENST00000383995 104 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 RNU6-413P-201ENST00000384115 107 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 RNU1-52P-201ENST00000384190 164 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 AL592310.1-201ENST00000414330 671 ntBASIC1.6□□□□□ -2.15
COL5A3P25940 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms