Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR6840-201ENST00000611937 71 ntBASIC1.93□□□□□ -2.1
USF1P22415 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.93□□□□□ -2.1
USF1P22415 AC091965.5-201ENST00000624785 342 ntBASIC1.93□□□□□ -2.1
USF1P22415 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.93□□□□□ -2.1
USF1P22415 AC005336.3-201ENST00000623833 2679 ntBASIC1.93□□□□□ -2.1
USF1P22415 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 MIRLET7G-201ENST00000362280 84 ntBASIC1.92□□□□□ -2.1
USF1P22415 RNU6-19P-201ENST00000384718 107 ntBASIC1.92□□□□□ -2.1
USF1P22415 NDUFS5P1-201ENST00000405668 289 ntBASIC1.92□□□□□ -2.1
USF1P22415 U6atac.2-201ENST00000408644 118 ntBASIC1.92□□□□□ -2.1
USF1P22415 U3.40-201ENST00000408706 208 ntBASIC1.92□□□□□ -2.1
USF1P22415 RNU6-757P-201ENST00000410334 100 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 USP9YP6-201ENST00000413550 854 ntBASIC1.92□□□□□ -2.1
USF1P22415 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 CYCSP48-201ENST00000417124 323 ntBASIC1.92□□□□□ -2.1
USF1P22415 VPS26BP1-201ENST00000417155 755 ntBASIC1.92□□□□□ -2.1
USF1P22415 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 LARP1BP3-201ENST00000437229 869 ntBASIC1.92□□□□□ -2.1
USF1P22415 FABP5P14-201ENST00000437273 393 ntBASIC1.92□□□□□ -2.1
USF1P22415 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 USP9YP25-201ENST00000457708 443 ntBASIC1.92□□□□□ -2.1
USF1P22415 RPL21P99-201ENST00000480369 423 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 LINC00888-204ENST00000487386 421 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 AC108210.2-201ENST00000503681 201 ntBASIC1.92□□□□□ -2.1
USF1P22415 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USF1P22415 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 HSPE1P18-201ENST00000517602 280 ntBASIC1.92□□□□□ -2.1
USF1P22415 AP004247.1-201ENST00000531556 1289 ntBASIC1.92□□□□□ -2.1
USF1P22415 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.92□□□□□ -2.1
USF1P22415 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.92□□□□□ -2.1
USF1P22415 AL121821.2-201ENST00000556081 394 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.92□□□□□ -2.1
USF1P22415 AC061975.8-201ENST00000587058 721 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.92□□□□□ -2.1
USF1P22415 AC106052.1-201ENST00000608029 497 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC009090.3-201ENST00000616553 565 ntBASIC1.92□□□□□ -2.1
USF1P22415 AC012640.5-201ENST00000623897 319 ntBASIC1.92□□□□□ -2.1
USF1P22415 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USF1P22415 MTND5P6-201ENST00000422338 1798 ntBASIC1.92□□□□□ -2.1
USF1P22415 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.91□□□□□ -2.1
USF1P22415 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.91□□□□□ -2.1
USF1P22415 AL359854.1-201ENST00000614203 1594 ntBASIC1.91□□□□□ -2.1
USF1P22415 RNU6-433P-201ENST00000363216 104 ntBASIC1.91□□□□□ -2.1
USF1P22415 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.91□□□□□ -2.1
USF1P22415 RNU6-906P-201ENST00000384700 70 ntBASIC1.91□□□□□ -2.1
USF1P22415 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
USF1P22415 MIR1289-2-201ENST00000408360 111 ntBASIC1.91□□□□□ -2.1
USF1P22415 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.91□□□□□ -2.1
USF1P22415 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.91□□□□□ -2.1
USF1P22415 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.91□□□□□ -2.1
USF1P22415 PTGES3P4-201ENST00000426243 356 ntBASIC1.91□□□□□ -2.1
USF1P22415 RPL30P4-201ENST00000429309 333 ntBASIC1.91□□□□□ -2.1
USF1P22415 AL591806.2-201ENST00000433122 173 ntBASIC1.91□□□□□ -2.1
USF1P22415 HMGN2P3-201ENST00000433603 273 ntBASIC1.91□□□□□ -2.1
USF1P22415 HMGN2P5-201ENST00000436882 273 ntBASIC1.91□□□□□ -2.1
USF1P22415 Y_RNA.638-201ENST00000459374 113 ntBASIC1.91□□□□□ -2.1
USF1P22415 DYNLL1P5-201ENST00000467158 270 ntBASIC1.91□□□□□ -2.1
USF1P22415 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
USF1P22415 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.91□□□□□ -2.1
USF1P22415 AC105185.1-201ENST00000518705 535 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC1.91□□□□□ -2.1
USF1P22415 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.91□□□□□ -2.1
USF1P22415 AP006587.4-201ENST00000526053 529 ntBASIC1.91□□□□□ -2.1
USF1P22415 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.91□□□□□ -2.1
USF1P22415 AC013828.2-201ENST00000532487 235 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.91□□□□□ -2.1
USF1P22415 RPS3AP4-201ENST00000555161 764 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC015712.3-201ENST00000559380 164 ntBASIC1.91□□□□□ -2.1
USF1P22415 AGGF1P5-201ENST00000567900 919 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC105245.1-201ENST00000581934 244 ntBASIC1.91□□□□□ -2.1
USF1P22415 AL031601.2-202ENST00000622650 282 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC007490.1-201ENST00000624321 703 ntBASIC1.91□□□□□ -2.1
USF1P22415 PISRT1-201ENST00000626175 531 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC025048.6-202ENST00000627667 438 ntBASIC1.91□□□□□ -2.1
USF1P22415 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.91□□□□□ -2.1
USF1P22415 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.91□□□□□ -2.1
USF1P22415 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.91□□□□□ -2.1
USF1P22415 AL109809.4-201ENST00000603520 2185 ntBASIC1.91□□□□□ -2.1
USF1P22415 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
USF1P22415 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
USF1P22415 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
USF1P22415 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
USF1P22415 MIR21-201ENST00000362134 72 ntBASIC1.9□□□□□ -2.11
USF1P22415 RNU6-486P-201ENST00000363116 107 ntBASIC1.9□□□□□ -2.11
USF1P22415 RNU1-51P-201ENST00000365345 176 ntBASIC1.9□□□□□ -2.11
USF1P22415 RNA5SP88-201ENST00000365560 109 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms