Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU6-1156P-201ENST00000410365 100 ntBASIC4.84□□□□□ -1.63
LIG1P18858 BX842559.1-201ENST00000419615 532 ntBASIC4.84□□□□□ -1.63
LIG1P18858 HMGB1P9-201ENST00000429856 646 ntBASIC4.84□□□□□ -1.63
LIG1P18858 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG1P18858 AL121871.1-201ENST00000443413 436 ntBASIC4.84□□□□□ -1.63
LIG1P18858 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG1P18858 SNORD127-201ENST00000458892 86 ntBASIC4.84□□□□□ -1.63
LIG1P18858 RN7SL98P-201ENST00000462271 300 ntBASIC4.84□□□□□ -1.63
LIG1P18858 RPS26P15-201ENST00000488067 348 ntBASIC4.84□□□□□ -1.63
LIG1P18858 RN7SL810P-201ENST00000493031 276 ntBASIC4.84□□□□□ -1.63
LIG1P18858 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.84□□□□□ -1.63
LIG1P18858 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.84□□□□□ -1.63
LIG1P18858 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.84□□□□□ -1.63
LIG1P18858 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.84□□□□□ -1.63
LIG1P18858 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.84□□□□□ -1.63
LIG1P18858 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG1P18858 HMGB1P50-201ENST00000605814 607 ntBASIC4.84□□□□□ -1.63
LIG1P18858 RNU6-85P-201ENST00000605989 107 ntBASIC4.84□□□□□ -1.63
LIG1P18858 AL591516.1-201ENST00000611326 274 ntBASIC4.84□□□□□ -1.63
LIG1P18858 AL031601.2-202ENST00000622650 282 ntBASIC4.84□□□□□ -1.63
LIG1P18858 AC138627.2-201ENST00000624202 601 ntBASIC4.84□□□□□ -1.63
LIG1P18858 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.84□□□□□ -1.63
LIG1P18858 LINC02471-203ENST00000641941 4752 ntBASIC4.84□□□□□ -1.63
LIG1P18858 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
LIG1P18858 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
LIG1P18858 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.83□□□□□ -1.64
LIG1P18858 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.83□□□□□ -1.64
LIG1P18858 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 AF127577.6-201ENST00000623352 2191 ntBASIC4.83□□□□□ -1.64
LIG1P18858 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 RNA5SP175-201ENST00000364275 119 ntBASIC4.83□□□□□ -1.64
LIG1P18858 Y_RNA.461-201ENST00000384263 103 ntBASIC4.83□□□□□ -1.64
LIG1P18858 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG1P18858 BX276092.3-201ENST00000424182 230 ntBASIC4.83□□□□□ -1.64
LIG1P18858 RPL23AP52-201ENST00000439311 478 ntBASIC4.83□□□□□ -1.64
LIG1P18858 DAP3P1-201ENST00000441522 278 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AL031274.1-201ENST00000450334 232 ntBASIC4.83□□□□□ -1.64
LIG1P18858 snoU13.3-201ENST00000459441 104 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AC108860.1-201ENST00000484521 383 ntBASIC4.83□□□□□ -1.64
LIG1P18858 Y_RNA.680-201ENST00000516441 93 ntBASIC4.83□□□□□ -1.64
LIG1P18858 RN7SKP40-201ENST00000517211 242 ntBASIC4.83□□□□□ -1.64
LIG1P18858 IGHV3-76-201ENST00000522465 295 ntBASIC4.83□□□□□ -1.64
LIG1P18858 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG1P18858 AC040926.1-201ENST00000530195 238 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG1P18858 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.83□□□□□ -1.64
LIG1P18858 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG1P18858 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG1P18858 AC078899.3-201ENST00000599065 212 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AL160281.1-201ENST00000605307 311 ntBASIC4.83□□□□□ -1.64
LIG1P18858 MIR6798-201ENST00000612887 67 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AC083809.1-201ENST00000615051 472 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AC114781.5-201ENST00000615297 108 ntBASIC4.83□□□□□ -1.64
LIG1P18858 AC103858.2-201ENST00000621471 543 ntBASIC4.83□□□□□ -1.64
LIG1P18858 MIR6830-201ENST00000636015 70 ntBASIC4.83□□□□□ -1.64
LIG1P18858 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.83□□□□□ -1.64
LIG1P18858 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG1P18858 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.83□□□□□ -1.64
LIG1P18858 AC010615.1-201ENST00000594254 1764 ntBASIC4.83□□□□□ -1.64
LIG1P18858 Z82217.1-201ENST00000625157 8149 ntBASIC4.83□□□□□ -1.64
LIG1P18858 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
LIG1P18858 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
LIG1P18858 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIG1P18858 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.82□□□□□ -1.64
LIG1P18858 AC005183.1-201ENST00000603687 1979 ntBASIC4.82□□□□□ -1.64
LIG1P18858 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIG1P18858 RNU4-42P-201ENST00000364738 142 ntBASIC4.82□□□□□ -1.64
LIG1P18858 MIR607-201ENST00000385241 96 ntBASIC4.82□□□□□ -1.64
LIG1P18858 RNU6-712P-201ENST00000410558 100 ntBASIC4.82□□□□□ -1.64
LIG1P18858 RNU4-78P-201ENST00000410940 126 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AL030996.1-201ENST00000411430 235 ntBASIC4.82□□□□□ -1.64
LIG1P18858 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.82□□□□□ -1.64
LIG1P18858 SSXP9-201ENST00000417503 292 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AC244098.2-201ENST00000422068 99 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.82□□□□□ -1.64
LIG1P18858 AL360271.2-201ENST00000447710 161 ntBASIC4.82□□□□□ -1.64
LIG1P18858 RPS11P1-201ENST00000451072 473 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AC018437.1-201ENST00000492214 406 ntBASIC4.82□□□□□ -1.64
LIG1P18858 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.82□□□□□ -1.64
LIG1P18858 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.82□□□□□ -1.64
LIG1P18858 LRRC37A5P-203ENST00000580181 585 ntBASIC4.82□□□□□ -1.64
LIG1P18858 MIR3939-201ENST00000582614 106 ntBASIC4.82□□□□□ -1.64
LIG1P18858 IPO5P1-202ENST00000600039 287 ntBASIC4.82□□□□□ -1.64
LIG1P18858 SNRPGP15-201ENST00000600149 222 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AC113403.1-201ENST00000604910 193 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AC005344.1-201ENST00000613391 459 ntBASIC4.82□□□□□ -1.64
LIG1P18858 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.82□□□□□ -1.64
LIG1P18858 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIG1P18858 PRO1804-201ENST00000623780 2050 ntBASIC4.82□□□□□ -1.64
LIG1P18858 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIG1P18858 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.82□□□□□ -1.64
LIG1P18858 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIG1P18858 AC106871.1-201ENST00000568324 3102 ntBASIC4.81□□□□□ -1.64
LIG1P18858 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
LIG1P18858 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
LIG1P18858 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms