Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HMGB3P10-201ENST00000434734 572 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 HSPE1P22-201ENST00000456856 327 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 Y_RNA.674-201ENST00000516362 113 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 RNA5SP471-201ENST00000516971 106 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 RRN3P3-201ENST00000549207 578 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 AK6-205ENST00000618980 483 ntTSL 2 BASIC0.54□□□□□ -2.32
COL6A3P12111 AC007275.1-201ENST00000621243 671 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.54□□□□□ -2.32
COL6A3P12111 TPTE2P4-201ENST00000258589 1605 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
COL6A3P12111 CCT4P2-201ENST00000233836 1548 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 RNA5SP450-201ENST00000411206 102 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 USP9YP21-201ENST00000420603 432 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC0.54□□□□□ -2.32
COL6A3P12111 AC118282.2-201ENST00000508739 374 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 OR5H4P-201ENST00000510851 923 ntBASIC0.54□□□□□ -2.32
COL6A3P12111 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.54□□□□□ -2.32
COL6A3P12111 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC0.54□□□□□ -2.32
COL6A3P12111 MIR146A-201ENST00000385201 99 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 Y_RNA.616-201ENST00000410835 95 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.53□□□□□ -2.32
COL6A3P12111 TRAPPC2P9-201ENST00000434556 343 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.53□□□□□ -2.32
COL6A3P12111 SNRPGP15-201ENST00000600149 222 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC0.53□□□□□ -2.32
COL6A3P12111 AC023934.1-201ENST00000574529 2389 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 AC069277.2-201ENST00000454211 432 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 SNORA62.5-201ENST00000516634 120 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 AL138713.1-201ENST00000624026 2130 ntBASIC0.53□□□□□ -2.32
COL6A3P12111 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC0.53□□□□□ -2.32
COL6A3P12111 AC074198.2-201ENST00000508153 258 ntBASIC0.53□□□□□ -2.33
COL6A3P12111 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.53□□□□□ -2.33
COL6A3P12111 CDC42P4-201ENST00000510507 563 ntBASIC0.53□□□□□ -2.33
COL6A3P12111 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.53□□□□□ -2.33
COL6A3P12111 AC003001.2-201ENST00000616294 831 ntBASIC0.53□□□□□ -2.33
COL6A3P12111 MTND5P17-201ENST00000418405 1603 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 MIR224-201ENST00000384889 81 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 MIR496-201ENST00000385226 102 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 RPL23AP47-201ENST00000408017 460 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 AC096533.1-201ENST00000411645 353 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 ELOCP10-201ENST00000440624 327 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 RNA5SP461-201ENST00000516451 104 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.52□□□□□ -2.33
COL6A3P12111 AC018659.1-201ENST00000551083 169 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 MIR5190-201ENST00000581537 80 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 AC009220.3-201ENST00000604318 586 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 ELOCP34-201ENST00000604436 327 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC0.52□□□□□ -2.33
COL6A3P12111 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.52□□□□□ -2.33
COL6A3P12111 RNU6-1180P-201ENST00000364935 107 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 MRPL35P3-201ENST00000421557 364 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 PTGES3P4-201ENST00000426243 356 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 USP9YP24-201ENST00000434374 697 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 SNORD124-201ENST00000459577 104 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.52□□□□□ -2.33
COL6A3P12111 RNU6-491P-201ENST00000516099 110 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC0.52□□□□□ -2.33
COL6A3P12111 SNORD39.2-201ENST00000579995 76 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.52□□□□□ -2.33
COL6A3P12111 MRPL35P1-201ENST00000404272 572 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 UBE2FP1-201ENST00000416536 447 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 RPS24P6-201ENST00000452670 400 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 TPT1P8-201ENST00000510120 555 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AF279873.1-201ENST00000523393 313 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC0.51□□□□□ -2.33
COL6A3P12111 AC141557.1-201ENST00000540982 400 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AC068714.1-201ENST00000559623 800 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AC087359.1-201ENST00000508335 1740 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.51□□□□□ -2.33
COL6A3P12111 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.51□□□□□ -2.33
COL6A3P12111 RPL22P18-201ENST00000417197 377 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC0.51□□□□□ -2.33
COL6A3P12111 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.51□□□□□ -2.33
COL6A3P12111 NDUFB4P2-201ENST00000509515 391 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 HMGB1P46-201ENST00000520062 610 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AC012414.6-201ENST00000568241 401 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 MTCO2P22-201ENST00000603246 681 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 AC106900.2-201ENST00000604994 317 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 Y_RNA.346-201ENST00000365385 112 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 RPL30P13-201ENST00000418873 348 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 RPL23AP95-201ENST00000426806 265 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 MTND5P15-201ENST00000434246 349 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 RN7SL660P-201ENST00000614852 299 ntBASIC0.51□□□□□ -2.33
COL6A3P12111 RNU6-50P-201ENST00000362356 103 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 Y_RNA.78-201ENST00000362970 110 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 SNORD114-31-201ENST00000363219 75 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
COL6A3P12111 RNU6-46P-201ENST00000383860 107 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 MTCO1P56-201ENST00000401674 224 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 MTATP6P4-201ENST00000427725 675 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC0.5□□□□□ -2.33
COL6A3P12111 LLPHP1-201ENST00000603571 367 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 RNA5SP108-201ENST00000605921 117 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 RNU1-96P-201ENST00000364163 162 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
COL6A3P12111 SNORD26-201ENST00000384147 75 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
COL6A3P12111 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.5□□□□□ -2.33
COL6A3P12111 AC093027.1-201ENST00000546698 429 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 FAM60CP-201ENST00000591086 664 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms