Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC090971.4-201ENST00000560291 1800 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6-1180P-201ENST00000364935 107 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6-407P-201ENST00000365280 104 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6-171P-201ENST00000384354 107 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 Y_RNA.498-201ENST00000384460 102 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 SNORA70E-201ENST00000384492 135 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 MIR626-201ENST00000385032 94 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 MIR551A-201ENST00000385042 96 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 BPY2DP-201ENST00000422208 265 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 SCARNA15.2-201ENST00000516409 127 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC022790.1-201ENST00000522872 204 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC093591.2-201ENST00000565254 3843 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC024153.1-201ENST00000603103 365 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 RPSAP73-201ENST00000614820 330 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 MIR7155-201ENST00000615925 56 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 AC118658.2-201ENST00000618697 459 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 MIR3914-2-201ENST00000637339 95 ntBASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 MTND5P35-201ENST00000557537 1720 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 Y_RNA.329-201ENST00000365209 107 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 RPL21P66-201ENST00000426566 466 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AC079780.1-201ENST00000428259 207 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 RPL12P46-201ENST00000436610 195 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 RPL36AP41-201ENST00000493820 306 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6-1007P-201ENST00000516586 107 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 CYCSP23-201ENST00000519781 313 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AC107016.1-201ENST00000550463 337 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AL121603.1-201ENST00000553815 142 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 MIR5571-201ENST00000577998 113 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 MIR3646-201ENST00000578301 84 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AC006272.2-201ENST00000594725 163 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AC087783.2-201ENST00000605070 562 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 AL360270.2-201ENST00000562952 5985 ntBASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
PCDHB3Q9Y5E6 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC015813.6-201ENST00000624409 5808 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC093535.2-201ENST00000624769 2326 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 RNA5SP507-201ENST00000363603 121 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6-801P-201ENST00000364087 105 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 Y_RNA.369-201ENST00000365568 117 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 SNORA8.3-201ENST00000384679 139 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC009963.1-201ENST00000417265 157 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AL139148.1-201ENST00000427122 680 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC112220.1-201ENST00000434628 355 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 RPS21P4-201ENST00000487122 248 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC091912.1-201ENST00000511351 248 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 SCARNA8-201ENST00000515924 131 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 RNU6-453P-201ENST00000516819 85 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 HMGN2P6-201ENST00000551091 273 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC025574.2-201ENST00000615621 514 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 AC013791.1-201ENST00000616619 62 ntBASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHB3Q9Y5E6 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms