Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.6□□□□□ -1.83
VSX1Q9NZR4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 MIR412-201ENST00000362142 91 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 SNORD62.1-201ENST00000362541 86 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 Y_RNA.112-201ENST00000363250 102 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 RNU6-512P-201ENST00000364438 103 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 Y_RNA.245-201ENST00000364493 95 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 RNU6-474P-201ENST00000384243 107 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 RNU2-33P-201ENST00000410344 192 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 TOMM22P1-201ENST00000418578 312 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 Z82205.1-201ENST00000428456 297 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 HSFY6P-201ENST00000445573 403 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AL360271.2-201ENST00000447710 161 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC009220.1-201ENST00000451614 275 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC084198.1-201ENST00000477747 402 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AL163540.1-201ENST00000485382 386 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC097473.1-201ENST00000508142 408 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 RNU6-988P-201ENST00000519081 107 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC022634.1-201ENST00000520765 532 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 ELOCP31-201ENST00000540463 467 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 MIR3186-201ENST00000577404 85 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC073539.2-201ENST00000597113 165 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 IPO5P1-202ENST00000600039 287 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 MIR6128-201ENST00000615528 109 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 MIR7641-1-201ENST00000627518 61 ntBASIC3.59□□□□□ -1.83
VSX1Q9NZR4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VSX1Q9NZR4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.59□□□□□ -1.84
VSX1Q9NZR4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.59□□□□□ -1.84
VSX1Q9NZR4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.84
VSX1Q9NZR4 IPO8P1-201ENST00000455509 3109 ntBASIC3.59□□□□□ -1.84
VSX1Q9NZR4 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 MIR369-201ENST00000362155 70 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 MIR578-201ENST00000384828 96 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 RNU6-1106P-201ENST00000390845 107 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 HSPE1P12-201ENST00000412576 301 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 Z85995.1-201ENST00000415547 335 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL158156.1-201ENST00000422509 473 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC087650.1-201ENST00000431445 468 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 FABP5P15-201ENST00000453566 214 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 RPL30P15-201ENST00000457129 321 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 RPL21P104-201ENST00000464143 478 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 RPL21P13-201ENST00000488305 481 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC009901.1-201ENST00000506703 541 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 RNU2-58P-201ENST00000516403 183 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC009643.1-201ENST00000532030 391 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 CYCSP29-201ENST00000533731 318 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC005899.2-201ENST00000584353 90 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AC002044.1-201ENST00000606707 158 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.58□□□□□ -1.84
VSX1Q9NZR4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VSX1Q9NZR4 AL353746.1-201ENST00000566293 6881 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RNA5SP322-201ENST00000363617 119 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 SNORA33.2-201ENST00000365413 134 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RNU6-738P-201ENST00000384531 106 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RNU6-1160P-201ENST00000384546 104 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 RNU6-95P-201ENST00000384697 107 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 MIR606-201ENST00000384851 96 ntBASIC3.57□□□□□ -1.84
VSX1Q9NZR4 SNORA75.4-201ENST00000391278 119 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms