Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 MIR4293-201ENST00000584305 78 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 MIR4999-201ENST00000585029 91 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 APOOP1-201ENST00000604695 592 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC025588.2-201ENST00000604851 466 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC009090.3-201ENST00000616553 565 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC025034.2-201ENST00000623264 286 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC010889.1-201ENST00000566193 2666 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-1167P-201ENST00000363227 94 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 SNORD113-6-201ENST00000363345 75 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-512P-201ENST00000364438 103 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-660P-201ENST00000364566 109 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AL359634.1-202ENST00000404721 284 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 CYCSP48-201ENST00000417124 323 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 USP9YP13-201ENST00000417797 480 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 SKA2P1-201ENST00000425592 390 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 ELOCP14-201ENST00000428070 331 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 MTND1P28-201ENST00000435623 950 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC018634.1-201ENST00000437554 401 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 ELOCP7-201ENST00000439968 331 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC034244.1-201ENST00000507687 207 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC114781.4-201ENST00000513707 639 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-927P-201ENST00000516199 100 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 RNU7-193P-201ENST00000516723 65 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 RNA5SP165-201ENST00000517142 115 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 MIR3162-201ENST00000581818 82 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 MIR4307-201ENST00000582802 84 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 MIR4448-201ENST00000584360 86 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 MIR5002-201ENST00000584713 97 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC239868.4-201ENST00000608318 671 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 MIR6132-201ENST00000622083 109 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 AC091965.5-201ENST00000624785 342 ntBASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.91□□□□□ -2.1
EXOSC4Q9NPD3 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-525P-201ENST00000363685 104 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 U3.12-201ENST00000364498 214 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 RNA5SP125-201ENST00000364843 120 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-253P-201ENST00000384730 105 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 MIR218-1-201ENST00000384999 110 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 MIR221-201ENST00000385135 110 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-278P-201ENST00000390945 109 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 SNORD23.1-201ENST00000408212 104 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 U3.40-201ENST00000408706 208 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 RPL17P12-201ENST00000413391 526 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 HMGN2P38-201ENST00000423806 265 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC007560.1-201ENST00000426912 237 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 MED14P1-201ENST00000430517 648 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 MICF-203ENST00000432679 129 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL591719.1-201ENST00000444669 744 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 EEF1B2P7-201ENST00000451177 676 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AP001486.1-201ENST00000463339 476 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC068781.1-201ENST00000488231 618 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 MRPS36P3-201ENST00000519284 130 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 DEFB108A-201ENST00000530110 222 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC068587.4-201ENST00000533893 186 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL354943.1-201ENST00000572103 781 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC098826.3-201ENST00000603823 466 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL021997.1-201ENST00000605757 193 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 TUSC7.1-201ENST00000610969 165 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AL031667.3-201ENST00000620124 655 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AP002782.1-201ENST00000623107 614 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC092192.1-201ENST00000633154 1018 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 MIR203B-201ENST00000636080 86 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms