Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC007969.2-201ENST00000441891 191 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 snoU13.20-201ENST00000459180 104 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RPL7AP28-201ENST00000464513 571 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RPS26P21-201ENST00000475397 348 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 MED28P2-201ENST00000475771 317 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RN7SL826P-201ENST00000479724 288 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC023424.1-201ENST00000496058 459 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC097462.2-201ENST00000504623 481 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC091868.1-201ENST00000508746 304 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.668-201ENST00000516233 93 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RNU6-570P-201ENST00000517051 105 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 SNORA31.23-201ENST00000517219 133 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC022868.1-201ENST00000517767 391 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC006199.1-201ENST00000548728 219 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 HSPE1P4-201ENST00000550617 308 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC009163.5-201ENST00000575421 637 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AL591034.3-201ENST00000605511 685 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AL022401.1-201ENST00000619498 108 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC091905.4-201ENST00000623432 202 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC243829.7-201ENST00000633081 225 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC233263.6-201ENST00000631132 1963 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
CCDC140Q96MF4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RNU6-222P-201ENST00000362438 107 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.27-201ENST00000362540 103 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RNA5SP123-201ENST00000363244 119 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 SNORD32A-201ENST00000364805 84 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RNU6-1286P-201ENST00000383871 107 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 MT-TW-201ENST00000387382 68 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RNU6-907P-201ENST00000390924 102 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 CTSL3P-202ENST00000412179 788 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 EIF1AXP1-201ENST00000419267 435 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC011742.1-201ENST00000431448 434 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 FCF1P4-201ENST00000448326 183 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RPL23AP56-201ENST00000460778 453 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RPL30P12-201ENST00000474666 353 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC010469.2-201ENST00000496412 480 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 ANXA2P1-201ENST00000505539 926 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 HMGB3P16-201ENST00000508037 287 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RNA5SP249-201ENST00000516127 99 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 ACA59.2-201ENST00000517061 156 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC034114.1-201ENST00000520293 285 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 BNIP3P1-201ENST00000547295 580 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AL442163.3-201ENST00000554110 156 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 SNORA74C-1-201ENST00000580726 201 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 RPL23AP88-201ENST00000605759 454 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC068870.2-201ENST00000620635 389 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AC130454.1-201ENST00000622948 401 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 AL133412.1-201ENST00000380194 2992 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 INTS6P1-201ENST00000504674 2530 ntBASIC3.77□□□□□ -1.81
CCDC140Q96MF4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC140Q96MF4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms