Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC104164.3-201ENST00000467363 1258 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 SETP11-201ENST00000473027 690 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC055731.1-201ENST00000474387 401 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 COL6A4P2-205ENST00000509855 506 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AF213884.2-201ENST00000510417 903 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC087481.2-201ENST00000565492 330 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AL158032.1-201ENST00000605401 106 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC068787.1-201ENST00000623908 691 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 MTND4P8-201ENST00000514997 1362 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RNU6-666P-201ENST00000363499 107 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RNU6-920P-201ENST00000410926 92 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RPL36P19-201ENST00000430744 301 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC008379.1-201ENST00000463655 464 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 EIF4EP3-201ENST00000498782 656 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 CBX3P3-201ENST00000508108 532 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 CYCSP2-201ENST00000558168 301 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC146944.4-201ENST00000602697 718 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AL049737.1-201ENST00000413920 1403 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 RNA5SP276-201ENST00000362580 94 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 YWHAZP8-201ENST00000436935 731 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 Z82210.1-201ENST00000440037 231 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AL359385.1-201ENST00000456509 365 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 RPS20P20-201ENST00000460498 340 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 CABYRP1-201ENST00000465493 1045 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 MRPS36P2-201ENST00000512569 299 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 OR5AK1P-201ENST00000524837 922 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC010186.2-204ENST00000537668 439 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC013244.2-201ENST00000603396 103 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC067863.3-201ENST00000624172 122 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC016716.1-201ENST00000265882 708 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 RNU6-220P-201ENST00000390919 107 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 RNU6-821P-201ENST00000390995 107 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 RNU6-1328P-201ENST00000410938 106 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AL357134.1-201ENST00000445848 426 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 MTND2P19-201ENST00000449129 1012 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 HSPE1P24-201ENST00000450782 238 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC004923.2-201ENST00000529649 369 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC012254.4-201ENST00000588843 273 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 HAUS6P2-201ENST00000433254 2404 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 RNA5SP511-201ENST00000410487 115 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 VPS26AP1-201ENST00000483197 979 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC117454.1-201ENST00000491120 168 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD9Q3L8U1 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 MIR3609-201ENST00000582661 80 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC008749.1-201ENST00000597650 306 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC016252.1-201ENST00000609721 474 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC079395.3-201ENST00000615161 484 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 AC079597.1-201ENST00000624306 508 ntBASIC0.67□□□□□ -2.3
CHD9Q3L8U1 Y_RNA.457-201ENST00000384237 111 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 RPL23AP6-201ENST00000446637 472 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC107626.1-201ENST00000471084 183 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AP003484.1-201ENST00000530974 250 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 CR383656.7-201ENST00000548164 174 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC073544.1-201ENST00000600110 1595 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 MTCO3P12-201ENST00000416718 547 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC098614.2-201ENST00000426040 255 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC010099.1-201ENST00000455434 375 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 snoU13.28-201ENST00000459235 104 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 RPS27P21-201ENST00000486977 252 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 EIF4EP5-201ENST00000528228 640 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC115085.1-201ENST00000588924 229 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC087045.1-201ENST00000605856 382 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AL118508.4-201ENST00000624142 1176 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 AC091932.3-201ENST00000624223 323 ntBASIC0.66□□□□□ -2.3
CHD9Q3L8U1 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC0.65□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms