Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 SNORD97-201ENST00000459187 142 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.31□□□□□ -1.72
MRE11P49959 HMGB1P25-201ENST00000468402 607 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.31□□□□□ -1.72
MRE11P49959 AC078918.1-201ENST00000498515 228 ntBASIC4.31□□□□□ -1.72
MRE11P49959 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.31□□□□□ -1.72
MRE11P49959 RNU2-58P-201ENST00000516403 183 ntBASIC4.31□□□□□ -1.72
MRE11P49959 Y_RNA.711-201ENST00000516993 102 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AC087369.1-201ENST00000520775 996 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.31□□□□□ -1.72
MRE11P49959 AP000889.2-201ENST00000532684 490 ntBASIC4.31□□□□□ -1.72
MRE11P49959 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.31□□□□□ -1.72
MRE11P49959 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.31□□□□□ -1.72
MRE11P49959 AC007151.1-201ENST00000572774 483 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AL355812.1-201ENST00000603215 216 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.31□□□□□ -1.72
MRE11P49959 AC124303.1-201ENST00000605703 360 ntBASIC4.31□□□□□ -1.72
MRE11P49959 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.31□□□□□ -1.72
MRE11P49959 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MRE11P49959 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.31□□□□□ -1.72
MRE11P49959 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MRE11P49959 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.31□□□□□ -1.72
MRE11P49959 PABPC1P7-201ENST00000413177 1513 ntBASIC4.31□□□□□ -1.72
MRE11P49959 ZNF826P-207ENST00000622273 1910 ntBASIC4.31□□□□□ -1.72
MRE11P49959 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MRE11P49959 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MRE11P49959 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MRE11P49959 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.3□□□□□ -1.72
MRE11P49959 Y_RNA.202-201ENST00000364083 110 ntBASIC4.3□□□□□ -1.72
MRE11P49959 MT-TC-201ENST00000387405 66 ntBASIC4.3□□□□□ -1.72
MRE11P49959 SOD2P1-201ENST00000396543 562 ntBASIC4.3□□□□□ -1.72
MRE11P49959 EI24P2-201ENST00000397776 1076 ntBASIC4.3□□□□□ -1.72
MRE11P49959 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.3□□□□□ -1.72
MRE11P49959 RPL7P46-201ENST00000425129 740 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AC093106.2-201ENST00000428212 385 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.3□□□□□ -1.72
MRE11P49959 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.3□□□□□ -1.72
MRE11P49959 RPS4XP2-201ENST00000458402 793 ntBASIC4.3□□□□□ -1.72
MRE11P49959 RNU7-152P-201ENST00000458982 64 ntBASIC4.3□□□□□ -1.72
MRE11P49959 RN7SL330P-201ENST00000469709 307 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AL049830.2-201ENST00000480072 201 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AC090096.1-201ENST00000489168 390 ntBASIC4.3□□□□□ -1.72
MRE11P49959 RPL7P23-201ENST00000493874 747 ntBASIC4.3□□□□□ -1.72
MRE11P49959 PHBP14-201ENST00000512887 367 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.3□□□□□ -1.72
MRE11P49959 AC099522.1-202ENST00000514718 367 ntBASIC4.3□□□□□ -1.72
MRE11P49959 HIGD1AP3-201ENST00000515857 278 ntBASIC4.3□□□□□ -1.72
MRE11P49959 RNU6-273P-201ENST00000516937 96 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.3□□□□□ -1.72
MRE11P49959 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.3□□□□□ -1.72
MRE11P49959 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.3□□□□□ -1.72
MRE11P49959 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.3□□□□□ -1.72
MRE11P49959 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
MRE11P49959 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.3□□□□□ -1.72
MRE11P49959 AL163153.1-201ENST00000554223 283 ntBASIC4.3□□□□□ -1.72
MRE11P49959 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.3□□□□□ -1.72
MRE11P49959 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.3□□□□□ -1.72
MRE11P49959 AL080274.1-201ENST00000605565 220 ntBASIC4.3□□□□□ -1.72
MRE11P49959 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.3□□□□□ -1.72
MRE11P49959 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.3□□□□□ -1.72
MRE11P49959 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.3□□□□□ -1.72
MRE11P49959 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
MRE11P49959 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MRE11P49959 API5P2-201ENST00000397055 1498 ntBASIC4.3□□□□□ -1.72
MRE11P49959 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MRE11P49959 AL133383.2-201ENST00000622958 2336 ntBASIC4.29□□□□□ -1.72
MRE11P49959 RNU6-1287P-201ENST00000362914 107 ntBASIC4.29□□□□□ -1.72
MRE11P49959 RNU6-805P-201ENST00000365643 106 ntBASIC4.29□□□□□ -1.72
MRE11P49959 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.29□□□□□ -1.72
MRE11P49959 RNU6-1060P-201ENST00000384664 107 ntBASIC4.29□□□□□ -1.72
MRE11P49959 RN7SKP156-201ENST00000410308 342 ntBASIC4.29□□□□□ -1.72
MRE11P49959 RNA5SP293-201ENST00000410527 113 ntBASIC4.29□□□□□ -1.72
MRE11P49959 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.29□□□□□ -1.72
MRE11P49959 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.29□□□□□ -1.72
MRE11P49959 AC107399.1-201ENST00000451226 265 ntBASIC4.29□□□□□ -1.72
MRE11P49959 AL163540.1-201ENST00000485382 386 ntBASIC4.29□□□□□ -1.72
MRE11P49959 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.29□□□□□ -1.72
MRE11P49959 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.29□□□□□ -1.72
MRE11P49959 AC104806.1-201ENST00000508720 308 ntBASIC4.29□□□□□ -1.72
MRE11P49959 AC098591.2-201ENST00000510152 315 ntBASIC4.29□□□□□ -1.72
MRE11P49959 NDUFB4P9-201ENST00000511646 388 ntBASIC4.29□□□□□ -1.72
MRE11P49959 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.29□□□□□ -1.72
MRE11P49959 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.29□□□□□ -1.72
MRE11P49959 RNA5SP208-201ENST00000516156 78 ntBASIC4.29□□□□□ -1.72
MRE11P49959 CR383656.7-201ENST00000548164 174 ntBASIC4.29□□□□□ -1.72
MRE11P49959 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.29□□□□□ -1.72
MRE11P49959 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MRE11P49959 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MRE11P49959 DPPA3P3-201ENST00000603842 430 ntBASIC4.29□□□□□ -1.72
MRE11P49959 Z82243.1-201ENST00000609432 473 ntBASIC4.29□□□□□ -1.72
MRE11P49959 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.29□□□□□ -1.72
MRE11P49959 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.29□□□□□ -1.72
MRE11P49959 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.29□□□□□ -1.72
MRE11P49959 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MRE11P49959 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.28□□□□□ -1.72
MRE11P49959 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
MRE11P49959 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.28□□□□□ -1.72
MRE11P49959 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MRE11P49959 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MRE11P49959 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms