Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 BTF3L4P2-201ENST00000392798 346 ntBASIC1.09□□□□□ -2.24
CUX1P39880 MTCO3P4-201ENST00000419236 787 ntBASIC1.09□□□□□ -2.24
CUX1P39880 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC1.09□□□□□ -2.24
CUX1P39880 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.09□□□□□ -2.24
CUX1P39880 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.09□□□□□ -2.24
CUX1P39880 AC016065.2-201ENST00000514530 444 ntBASIC1.09□□□□□ -2.24
CUX1P39880 OR6C7P-201ENST00000547875 934 ntBASIC1.09□□□□□ -2.24
CUX1P39880 RRN3P3-201ENST00000549207 578 ntBASIC1.09□□□□□ -2.24
CUX1P39880 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC1.09□□□□□ -2.24
CUX1P39880 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.09□□□□□ -2.24
CUX1P39880 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.09□□□□□ -2.24
CUX1P39880 AC090888.1-201ENST00000561335 1141 ntBASIC1.09□□□□□ -2.24
CUX1P39880 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.09□□□□□ -2.24
CUX1P39880 MIR4529-201ENST00000578110 78 ntBASIC1.09□□□□□ -2.24
CUX1P39880 MIR3609-201ENST00000582661 80 ntBASIC1.09□□□□□ -2.24
CUX1P39880 AC243829.3-201ENST00000622177 108 ntBASIC1.09□□□□□ -2.24
CUX1P39880 AL136313.1-201ENST00000624804 202 ntBASIC1.09□□□□□ -2.24
CUX1P39880 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
CUX1P39880 RNA5SP347-201ENST00000362445 119 ntBASIC1.08□□□□□ -2.24
CUX1P39880 RNU6-939P-201ENST00000384634 107 ntBASIC1.08□□□□□ -2.24
CUX1P39880 MIR934-201ENST00000401241 83 ntBASIC1.08□□□□□ -2.24
CUX1P39880 FTH1P15-201ENST00000406984 280 ntBASIC1.08□□□□□ -2.24
CUX1P39880 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC1.08□□□□□ -2.24
CUX1P39880 AC092628.1-201ENST00000436250 252 ntBASIC1.08□□□□□ -2.24
CUX1P39880 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.08□□□□□ -2.24
CUX1P39880 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.08□□□□□ -2.24
CUX1P39880 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.08□□□□□ -2.24
CUX1P39880 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.08□□□□□ -2.24
CUX1P39880 OR4G3P-201ENST00000633500 913 ntBASIC1.08□□□□□ -2.24
CUX1P39880 RNA5SP276-201ENST00000362580 94 ntBASIC1.07□□□□□ -2.24
CUX1P39880 U3.29-201ENST00000391296 212 ntBASIC1.07□□□□□ -2.24
CUX1P39880 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.07□□□□□ -2.24
CUX1P39880 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC1.07□□□□□ -2.24
CUX1P39880 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC1.07□□□□□ -2.24
CUX1P39880 CBX3P3-201ENST00000508108 532 ntBASIC1.07□□□□□ -2.24
CUX1P39880 AC112518.2-201ENST00000508565 425 ntBASIC1.07□□□□□ -2.24
CUX1P39880 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.07□□□□□ -2.24
CUX1P39880 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.07□□□□□ -2.24
CUX1P39880 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.07□□□□□ -2.24
CUX1P39880 AL773524.1-201ENST00000614065 229 ntBASIC1.07□□□□□ -2.24
CUX1P39880 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC1.07□□□□□ -2.24
CUX1P39880 ELL2P3-201ENST00000457883 1602 ntBASIC1.07□□□□□ -2.24
CUX1P39880 AC087359.1-201ENST00000508335 1740 ntBASIC1.06□□□□□ -2.24
CUX1P39880 RNU5D-1-201ENST00000363299 116 ntBASIC1.06□□□□□ -2.24
CUX1P39880 MT-TC-201ENST00000387405 66 ntBASIC1.06□□□□□ -2.24
CUX1P39880 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.06□□□□□ -2.24
CUX1P39880 OR9R1P-201ENST00000412200 877 ntBASIC1.06□□□□□ -2.24
CUX1P39880 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.06□□□□□ -2.24
CUX1P39880 snoU109.1-201ENST00000459339 135 ntBASIC1.06□□□□□ -2.24
CUX1P39880 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC1.06□□□□□ -2.24
CUX1P39880 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.06□□□□□ -2.24
CUX1P39880 LINC00933-203ENST00000559812 219 ntBASIC1.06□□□□□ -2.24
CUX1P39880 MIR5571-201ENST00000577998 113 ntBASIC1.06□□□□□ -2.24
CUX1P39880 AL592148.2-201ENST00000612210 372 ntBASIC1.06□□□□□ -2.24
CUX1P39880 RNU6-1249P-201ENST00000363237 111 ntBASIC1.05□□□□□ -2.24
CUX1P39880 KLF3P2-201ENST00000465138 268 ntBASIC1.05□□□□□ -2.24
CUX1P39880 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.05□□□□□ -2.24
CUX1P39880 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.05□□□□□ -2.24
CUX1P39880 AC112198.4-201ENST00000515450 351 ntBASIC1.05□□□□□ -2.24
CUX1P39880 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
CUX1P39880 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.05□□□□□ -2.24
CUX1P39880 MIR6866-201ENST00000638146 69 ntBASIC1.05□□□□□ -2.24
CUX1P39880 SDAD1P2-201ENST00000441308 2028 ntBASIC1.05□□□□□ -2.24
CUX1P39880 RNA5SP258-201ENST00000362750 119 ntBASIC1.05□□□□□ -2.24
CUX1P39880 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.05□□□□□ -2.24
CUX1P39880 RNU6-319P-201ENST00000516025 108 ntBASIC1.05□□□□□ -2.24
CUX1P39880 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC1.05□□□□□ -2.24
CUX1P39880 AC243960.4-201ENST00000600532 288 ntBASIC1.05□□□□□ -2.24
CUX1P39880 AC021646.1-201ENST00000605469 484 ntBASIC1.05□□□□□ -2.24
CUX1P39880 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.04□□□□□ -2.24
CUX1P39880 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.04□□□□□ -2.24
CUX1P39880 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
CUX1P39880 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.04□□□□□ -2.24
CUX1P39880 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC1.04□□□□□ -2.24
CUX1P39880 AC087588.1-201ENST00000462203 316 ntBASIC1.04□□□□□ -2.24
CUX1P39880 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.04□□□□□ -2.24
CUX1P39880 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC1.04□□□□□ -2.24
CUX1P39880 CYP4A27P-201ENST00000567218 190 ntBASIC1.04□□□□□ -2.24
CUX1P39880 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.04□□□□□ -2.24
CUX1P39880 AC021749.1-201ENST00000604322 607 ntBASIC1.04□□□□□ -2.24
CUX1P39880 DUSP12P1-201ENST00000612874 516 ntBASIC1.04□□□□□ -2.24
CUX1P39880 AC004852.3-201ENST00000614131 326 ntBASIC1.04□□□□□ -2.24
CUX1P39880 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CUX1P39880 MIR26B-201ENST00000362251 77 ntBASIC1.03□□□□□ -2.24
CUX1P39880 RNU6-1251P-201ENST00000364502 107 ntBASIC1.03□□□□□ -2.24
CUX1P39880 Y_RNA.412-201ENST00000384001 104 ntBASIC1.03□□□□□ -2.24
CUX1P39880 SNORD65-201ENST00000391079 73 ntBASIC1.03□□□□□ -2.24
CUX1P39880 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC1.03□□□□□ -2.24
CUX1P39880 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC1.03□□□□□ -2.24
CUX1P39880 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.03□□□□□ -2.24
CUX1P39880 TPTE2P6-202ENST00000445572 1007 ntBASIC1.03□□□□□ -2.24
CUX1P39880 RPS20P10-201ENST00000451209 253 ntBASIC1.03□□□□□ -2.24
CUX1P39880 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.03□□□□□ -2.24
CUX1P39880 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.03□□□□□ -2.24
CUX1P39880 EEF1B2P4-201ENST00000551398 348 ntBASIC1.03□□□□□ -2.24
CUX1P39880 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.03□□□□□ -2.24
CUX1P39880 AP003476.1-201ENST00000623984 516 ntBASIC1.03□□□□□ -2.24
CUX1P39880 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CUX1P39880 Y_RNA.390-201ENST00000383932 102 ntBASIC1.02□□□□□ -2.25
CUX1P39880 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms