Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC007256.1-201ENST00000392253 2765 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.94□□□□□ -1.78
SMARCA1P28370 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.94□□□□□ -1.78
SMARCA1P28370 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SMARCA1P28370 MTND4P14-201ENST00000435799 1354 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.94□□□□□ -1.78
SMARCA1P28370 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SMARCA1P28370 RNU6-845P-201ENST00000362578 103 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 RNU6-116P-201ENST00000384042 109 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 RNU6-190P-201ENST00000384154 102 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
SMARCA1P28370 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SMARCA1P28370 RNU4-46P-201ENST00000410818 138 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 PDCL2P1-201ENST00000419302 352 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 UBE2D3P2-201ENST00000424409 445 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.94□□□□□ -1.78
SMARCA1P28370 MTND1P11-201ENST00000456661 876 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 AC008155.2-201ENST00000464337 397 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 RPL21P8-201ENST00000465083 535 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 RPL23AP67-201ENST00000465341 474 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 AC091885.1-201ENST00000506658 268 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.94□□□□□ -1.78
SMARCA1P28370 RNU6-677P-201ENST00000516914 101 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 IGHV3-76-201ENST00000522465 295 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 MTND4P7-201ENST00000523876 130 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AL137161.1-201ENST00000532231 390 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.94□□□□□ -1.78
SMARCA1P28370 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AC099654.5-201ENST00000636479 350 ntBASIC3.94□□□□□ -1.78
SMARCA1P28370 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.94□□□□□ -1.78
SMARCA1P28370 AC008568.2-201ENST00000623862 2313 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 MTND4P35-201ENST00000604257 1375 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SMARCA1P28370 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SMARCA1P28370 RNA5SP72-201ENST00000364442 117 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 CISD1P1-201ENST00000393907 327 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SMARCA1P28370 U3.42-201ENST00000408746 214 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AL513331.1-201ENST00000411908 397 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 RPS12P24-201ENST00000412619 387 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AC091390.3-201ENST00000426478 338 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AL590639.1-201ENST00000456484 337 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 snoU13.22-201ENST00000459428 104 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.93□□□□□ -1.78
SMARCA1P28370 TTC39CP1-201ENST00000512513 755 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.93□□□□□ -1.78
SMARCA1P28370 Y_RNA.665-201ENST00000516177 98 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 RNU6-1314P-201ENST00000517139 104 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AC005261.5-201ENST00000596280 355 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 AL117336.2-201ENST00000602435 335 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 AC012314.7-201ENST00000619693 93 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 AC009248.2-201ENST00000619826 254 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.93□□□□□ -1.78
SMARCA1P28370 AC005858.4-201ENST00000623191 700 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 MTCO1P12-201ENST00000414273 1543 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SMARCA1P28370 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SMARCA1P28370 AL513302.2-201ENST00000562313 1842 ntBASIC3.93□□□□□ -1.78
SMARCA1P28370 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SMARCA1P28370 AL136164.4-201ENST00000625013 2135 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
SMARCA1P28370 Y_RNA.167-201ENST00000363735 109 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 SNORD46.1-201ENST00000364139 104 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 Y_RNA.263-201ENST00000364659 114 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 Y_RNA.378-201ENST00000365652 113 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
SMARCA1P28370 MIR34B-201ENST00000385076 84 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 RNU6-817P-201ENST00000391083 104 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AL645937.1-202ENST00000421799 937 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.92□□□□□ -1.78
SMARCA1P28370 CALM2P2-201ENST00000428512 440 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AL356867.1-201ENST00000429623 299 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 MTND3P23-201ENST00000431980 347 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC008264.1-201ENST00000447612 367 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC092001.1-201ENST00000453012 261 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.92□□□□□ -1.78
SMARCA1P28370 RNU6-927P-201ENST00000516199 100 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.92□□□□□ -1.78
SMARCA1P28370 BTF3P12-201ENST00000519620 469 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.92□□□□□ -1.78
SMARCA1P28370 PSMA3P-201ENST00000555485 635 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.92□□□□□ -1.78
SMARCA1P28370 TGIF1P1-201ENST00000558095 802 ntBASIC3.92□□□□□ -1.78
SMARCA1P28370 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms