Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 USP9YP22-201ENST00000438971 294 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 MTCYBP34-201ENST00000439552 670 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AL139109.1-201ENST00000455491 297 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.64□□□□□ -2.15
COL5A3P25940 AC093767.1-201ENST00000504523 156 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC1.64□□□□□ -2.15
COL5A3P25940 AC105914.1-201ENST00000511798 226 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AC025755.1-201ENST00000521306 278 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.64□□□□□ -2.15
COL5A3P25940 LSM6P2-201ENST00000552208 177 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
COL5A3P25940 AL138976.2-201ENST00000563989 694 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AL132657.2-201ENST00000564417 358 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AC138915.2-201ENST00000569776 97 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.64□□□□□ -2.15
COL5A3P25940 AL669831.4-202ENST00000590817 238 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.64□□□□□ -2.15
COL5A3P25940 AL450336.1-201ENST00000605180 586 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.64□□□□□ -2.15
COL5A3P25940 AL121895.2-201ENST00000619558 447 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.64□□□□□ -2.15
COL5A3P25940 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.64□□□□□ -2.15
COL5A3P25940 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.64□□□□□ -2.15
COL5A3P25940 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL5A3P25940 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.64□□□□□ -2.15
COL5A3P25940 RNU6-461P-201ENST00000364195 107 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 SSR1P2-201ENST00000415208 787 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 RPL7P30-201ENST00000420888 709 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 MRPS36P1-201ENST00000421291 307 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 DPRXP1-201ENST00000426312 460 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AL035410.1-201ENST00000427409 427 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 SGO1P2-201ENST00000429458 1589 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 USP9YP24-201ENST00000434374 697 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.63□□□□□ -2.15
COL5A3P25940 USP9YP17-201ENST00000444617 696 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 DUXAP8-207ENST00000456786 622 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 HMGB3P3-201ENST00000510526 400 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC110760.3-202ENST00000515177 371 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 RNU6-1261P-201ENST00000517194 104 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC087808.1-201ENST00000520501 361 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 ARL2BPP5-201ENST00000523141 481 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC084364.2-201ENST00000546924 395 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC109446.2-201ENST00000567872 497 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.63□□□□□ -2.15
COL5A3P25940 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC025588.3-201ENST00000604182 274 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC008962.1-201ENST00000605729 304 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 DUXAP10-204ENST00000612052 616 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC018755.4-201ENST00000619715 454 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 MTND2P41-201ENST00000637599 773 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 MKKS-204ENST00000639674 192 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 DBF4P1-201ENST00000412976 1892 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AP000568.1-201ENST00000282964 442 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 Y_RNA.311-201ENST00000365068 96 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 SUGT1P1-201ENST00000379514 476 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 RNU6-921P-201ENST00000384361 107 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AL030996.1-201ENST00000411430 235 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 SRIP3-201ENST00000413200 219 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC092648.1-201ENST00000425870 423 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 MTND2P5-201ENST00000432656 1006 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 CR769776.1-201ENST00000441254 787 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AL606517.1-201ENST00000446914 387 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC113347.3-201ENST00000509113 148 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 MTCYBP16-201ENST00000509187 1129 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC079395.1-201ENST00000510981 262 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC113155.1-201ENST00000511141 769 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC1.63□□□□□ -2.15
COL5A3P25940 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC1.63□□□□□ -2.15
COL5A3P25940 AC105148.1-201ENST00000604961 409 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC091946.2-201ENST00000606105 291 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC106052.1-201ENST00000608029 497 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 U6.101-201ENST00000637707 76 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 AC106754.1-201ENST00000562632 1513 ntBASIC1.63□□□□□ -2.15
COL5A3P25940 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.62□□□□□ -2.15
COL5A3P25940 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.62□□□□□ -2.15
COL5A3P25940 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
COL5A3P25940 Y_RNA.25-201ENST00000362528 102 ntBASIC1.62□□□□□ -2.15
COL5A3P25940 RNU4-28P-201ENST00000364739 141 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms