Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC132479.1-201ENST00000449160 144 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL162389.1-201ENST00000449233 177 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC126182.1-201ENST00000478134 357 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RPL30P14-201ENST00000482744 348 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC091826.1-201ENST00000514065 313 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 MTND4LP26-201ENST00000518144 282 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD4P09016 MTATP6P3-201ENST00000581686 676 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL391646.1-201ENST00000603860 190 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AC008277.2-201ENST00000605196 797 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RPL23AP88-201ENST00000605759 454 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 TUG1_2.1-201ENST00000614234 87 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL603758.1-201ENST00000618654 241 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL160394.1-201ENST00000624765 724 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD4P09016 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD4P09016 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXD4P09016 ASNSP3-201ENST00000451989 1306 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.68□□□□□ -1.98
HOXD4P09016 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 Y_RNA.1-201ENST00000352915 104 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 RNU6-511P-201ENST00000363496 107 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 RNU6-39P-201ENST00000384344 107 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HOXD4P09016 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXD4P09016 CALM2P3-201ENST00000400429 449 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 RNA5SP38-201ENST00000410750 119 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 RPL19P1-201ENST00000411635 428 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 PPP1R11P2-201ENST00000423543 382 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD4P09016 MTCO2P19-201ENST00000427513 598 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 NDUFB4P6-201ENST00000436819 366 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 PSPHP1-201ENST00000450062 261 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AL049714.1-201ENST00000466686 347 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC007182.2-201ENST00000489251 402 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXD4P09016 AL359273.1-201ENST00000510918 627 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC011352.1-201ENST00000512300 793 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC010493.1-201ENST00000513479 292 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 SCGB1D5P-201ENST00000515134 247 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC090572.1-201ENST00000519251 160 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 HMGN1P28-201ENST00000521340 364 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.68□□□□□ -1.98
HOXD4P09016 AC123904.3-201ENST00000547218 814 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 SUB1P2-201ENST00000556401 297 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.68□□□□□ -1.98
HOXD4P09016 MTCO3P24-201ENST00000572729 782 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD4P09016 AC004067.1-201ENST00000608733 700 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 U4.5-201ENST00000617137 123 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AC073534.2-201ENST00000620377 381 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AL359880.1-201ENST00000621879 266 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HOXD4P09016 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 AC008568.2-201ENST00000623862 2313 ntBASIC2.68□□□□□ -1.98
HOXD4P09016 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD4P09016 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.67□□□□□ -1.98
HOXD4P09016 CR848007.1-201ENST00000442354 1699 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD4P09016 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 SNORD56.2-201ENST00000363242 71 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 Y_RNA.159-201ENST00000363674 87 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RNY1P12-201ENST00000364251 105 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 SNORA14A-201ENST00000364773 135 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 Y_RNA.372-201ENST00000365599 102 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 SNORD67-201ENST00000390833 111 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RNU6-780P-201ENST00000391030 104 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 MTCO3P40-201ENST00000392516 676 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD4P09016 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD4P09016 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RNU2-36P-201ENST00000410361 191 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.67□□□□□ -1.98
HOXD4P09016 RPL21P24-201ENST00000413752 448 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 EIF1P1-201ENST00000421436 341 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 AC137499.1-201ENST00000427602 88 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RPL23AP30-201ENST00000432419 501 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms