Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC241584.1-201ENST00000438469 1241 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 RPS27P23-201ENST00000487608 251 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 AC036111.3-201ENST00000526389 112 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
CCDC88BA6NC98 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC88BA6NC98 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.03□□□□□ -2.24
CCDC88BA6NC98 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CCDC88BA6NC98 AC243829.3-201ENST00000622177 108 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 AC092393.1-201ENST00000439625 742 ntBASIC1.02□□□□□ -2.25
CCDC88BA6NC98 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 PNPLA4P1-201ENST00000458328 305 ntBASIC1.02□□□□□ -2.25
CCDC88BA6NC98 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 LINC02211-204ENST00000642024 1070 ntBASIC1.02□□□□□ -2.25
CCDC88BA6NC98 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC88BA6NC98 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC88BA6NC98 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.01□□□□□ -2.25
CCDC88BA6NC98 Z82190.1-201ENST00000454534 490 ntBASIC1.01□□□□□ -2.25
CCDC88BA6NC98 DUXAP8-207ENST00000456786 622 ntBASIC1.01□□□□□ -2.25
CCDC88BA6NC98 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC88BA6NC98 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC88BA6NC98 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88BA6NC98 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88BA6NC98 SNRPGP16-201ENST00000533275 226 ntBASIC1.01□□□□□ -2.25
CCDC88BA6NC98 MIR3198-2-201ENST00000577868 80 ntBASIC1.01□□□□□ -2.25
CCDC88BA6NC98 AL360181.4-201ENST00000621752 134 ntBASIC1.01□□□□□ -2.25
CCDC88BA6NC98 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1□□□□□ -2.25
CCDC88BA6NC98 RNU6-220P-201ENST00000390919 107 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 RNA5SP127-201ENST00000411051 133 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 MTND5P15-201ENST00000434246 349 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 TPTE2P6-202ENST00000445572 1007 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 snoU13.28-201ENST00000459235 104 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 OR2A41P-201ENST00000473586 105 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 RPL31P60-201ENST00000478450 367 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 AK3P2-201ENST00000507976 429 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 AC006270.3-201ENST00000605967 1036 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 AC090132.2-201ENST00000615881 347 ntBASIC1□□□□□ -2.25
CCDC88BA6NC98 snoU13.7-201ENST00000459220 104 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC090888.1-201ENST00000561335 1141 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC087481.2-201ENST00000565492 330 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC090666.1-201ENST00000578241 445 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AL355877.2-201ENST00000603670 358 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC008945.2-201ENST00000606056 604 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AC004808.1-201ENST00000627671 721 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AL589655.1-201ENST00000405398 482 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AL359385.1-201ENST00000456509 365 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 SNORA44.1-201ENST00000517031 108 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AL713998.2-201ENST00000604538 1198 ntBASIC0.99□□□□□ -2.25
CCDC88BA6NC98 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.98□□□□□ -2.25
CCDC88BA6NC98 RNU6-1187P-201ENST00000364771 110 ntBASIC0.98□□□□□ -2.25
CCDC88BA6NC98 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC88BA6NC98 RNA5SP165-201ENST00000517142 115 ntBASIC0.98□□□□□ -2.25
CCDC88BA6NC98 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC88BA6NC98 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.98□□□□□ -2.25
CCDC88BA6NC98 AL355802.3-201ENST00000607571 545 ntBASIC0.98□□□□□ -2.25
CCDC88BA6NC98 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC88BA6NC98 SNORD26-201ENST00000384147 75 ntBASIC0.97□□□□□ -2.25
CCDC88BA6NC98 MIR146A-201ENST00000385201 99 ntBASIC0.97□□□□□ -2.25
CCDC88BA6NC98 RPL23AP32-201ENST00000395315 459 ntBASIC0.97□□□□□ -2.25
CCDC88BA6NC98 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.97□□□□□ -2.25
CCDC88BA6NC98 AC008379.1-201ENST00000463655 464 ntBASIC0.97□□□□□ -2.25
CCDC88BA6NC98 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88BA6NC98 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88BA6NC98 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC88BA6NC98 MIR515-2-201ENST00000384883 83 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 MIR515-1-201ENST00000384884 83 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 MIR493-201ENST00000385254 89 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 AL161651.1-201ENST00000440882 223 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 MTND4LP3-201ENST00000468320 276 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.96□□□□□ -2.26
CCDC88BA6NC98 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.96□□□□□ -2.26
CCDC88BA6NC98 RNU6-229P-201ENST00000516614 102 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 OR5B19P-201ENST00000531766 928 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 AC016925.2-201ENST00000605108 242 ntBASIC0.96□□□□□ -2.26
CCDC88BA6NC98 MIR618-201ENST00000385287 98 ntBASIC0.95□□□□□ -2.26
CCDC88BA6NC98 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
CCDC88BA6NC98 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC88BA6NC98 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC88BA6NC98 CYCSP23-201ENST00000519781 313 ntBASIC0.95□□□□□ -2.26
CCDC88BA6NC98 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.95□□□□□ -2.26
CCDC88BA6NC98 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.95□□□□□ -2.26
CCDC88BA6NC98 OR4G3P-201ENST00000633500 913 ntBASIC0.95□□□□□ -2.26
CCDC88BA6NC98 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC88BA6NC98 SNORA25.8-201ENST00000364831 128 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 RNU4-78P-201ENST00000410940 126 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 AC093106.2-201ENST00000428212 385 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 RPL39P28-201ENST00000465655 155 ntBASIC0.94□□□□□ -2.26
CCDC88BA6NC98 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms