Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC011753.3-201ENST00000443436 406 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 U8.22-201ENST00000459141 133 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 TOMM22P6-201ENST00000465035 409 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 RPL7P47-201ENST00000497299 556 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC108145.1-201ENST00000503770 153 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 RPL21P7-201ENST00000557463 483 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 MIR4458-201ENST00000578872 75 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 U6.106-201ENST00000636360 105 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC112198.2-201ENST00000426589 6996 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 MAPK10-263ENST00000641052 4307 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 SNORD50B-201ENST00000364995 70 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 SNORA70F-201ENST00000384142 135 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 MIR192-201ENST00000384915 110 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 RN7SKP267-201ENST00000410381 285 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 RNU2-20P-201ENST00000410425 191 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 RPL36AP10-201ENST00000421785 322 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AC007560.1-201ENST00000426912 237 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 RPS6P12-201ENST00000432491 726 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 H2AFZP5-201ENST00000446960 382 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 ANP32BP2-201ENST00000454525 545 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 RPS29P33-201ENST00000456717 146 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AC092798.1-201ENST00000458542 409 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AK6P2-201ENST00000549020 471 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AC004024.1-201ENST00000549244 247 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AC025884.1-201ENST00000556034 378 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 HMGB1P14-201ENST00000557424 591 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AP001485.1-201ENST00000604799 199 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 AC004832.4-201ENST00000608952 331 ntBASIC4.94□□□□□ -1.62
USP3Q9Y6I4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
USP3Q9Y6I4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.170-201ENST00000363746 110 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.292-201ENST00000364904 97 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 RNU6-968P-201ENST00000384076 107 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 RNU6-514P-201ENST00000384208 107 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AL592291.1-201ENST00000403830 352 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 EIF1P2-201ENST00000428233 350 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC005002.2-201ENST00000438228 269 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC009296.1-201ENST00000443146 155 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC016700.2-201ENST00000446011 156 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 RPL36AP41-201ENST00000493820 306 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms