Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 TRAV37-201ENST00000553906 342 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AC010680.1-201ENST00000590024 3590 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 SNORA75B-201ENST00000384053 137 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 MIR514A2-201ENST00000385131 88 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 MIR514A3-201ENST00000385132 88 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 SNORA16.2-201ENST00000390991 127 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 ATP5A1P2-201ENST00000412323 255 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AL159169.1-201ENST00000421119 127 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 RNU7-23P-201ENST00000459465 62 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 RPS29P20-201ENST00000489592 171 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AC026801.1-201ENST00000497178 464 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 CCDC34P1-201ENST00000507441 517 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 RNU2-69P-201ENST00000516061 100 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 CENPUP1-201ENST00000526649 1202 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AC073539.2-201ENST00000597113 165 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 AP005264.7-201ENST00000625003 745 ntBASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CCDC9Q9Y3X0 NCAPGP1-201ENST00000505112 1814 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 RPL5P18-201ENST00000406671 891 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 RNA5SP146-201ENST00000410743 123 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 Y_RNA.623-201ENST00000411128 95 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 TOMM20P4-201ENST00000427861 435 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AL714022.1-201ENST00000439897 151 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 RN7SL807P-201ENST00000470923 297 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 RPS27AP10-201ENST00000496103 208 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC079140.5-201ENST00000507882 310 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 SNORA31.21-201ENST00000517180 77 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC087369.1-201ENST00000520775 996 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC069240.1-201ENST00000548774 375 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC011611.1-201ENST00000552179 197 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 MTCO3P24-201ENST00000572729 782 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 HMGN2P15-201ENST00000585707 270 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC9Q9Y3X0 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 SNORD3E-201ENST00000362899 217 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 Y_RNA.399-201ENST00000383955 105 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 BX323014.1-201ENST00000412876 237 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 RNU7-167P-201ENST00000459160 62 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 RPS29P25-201ENST00000481709 171 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 DEFB109F-201ENST00000491870 277 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 MTND3P25-201ENST00000509243 135 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-1038P-201ENST00000516516 104 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-1183P-201ENST00000517054 60 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 AC078814.3-201ENST00000553036 491 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 RPL21P7-201ENST00000557463 483 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 AC234778.2-201ENST00000566241 354 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 MIR3941-201ENST00000582572 103 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 AL645944.1-201ENST00000603857 493 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-89P-201ENST00000606519 100 ntBASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CCDC9Q9Y3X0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms