Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AP001646.1-201ENST00000527936 915 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AP000907.2-201ENST00000530827 353 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 RPS3AP23-202ENST00000574601 686 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 MIR5007-201ENST00000583098 95 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AC004805.2-201ENST00000605382 482 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AC091965.4-201ENST00000607691 587 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AC004908.2-201ENST00000609090 574 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AC046143.2-201ENST00000609789 160 ntBASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
EXOSC4Q9NPD3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC004520.1-201ENST00000608362 1413 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 HSPE1P11-201ENST00000339579 310 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 SNORA38-201ENST00000363946 132 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 HMGB1P49-201ENST00000418882 569 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC005005.2-201ENST00000420779 380 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 USP9YP26-201ENST00000421008 661 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 BPY2DP-201ENST00000422208 265 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AL022400.1-201ENST00000423946 935 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AL035407.1-201ENST00000429211 571 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 HMGB1P9-201ENST00000429856 646 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC236972.1-201ENST00000433225 199 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LARP1BP3-201ENST00000437229 869 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 RNU7-59P-201ENST00000459101 61 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC090515.1-201ENST00000465295 476 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC079804.2-201ENST00000490376 200 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC087276.1-201ENST00000529659 480 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC027176.1-201ENST00000560204 514 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 MIR5571-201ENST00000577998 113 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC068790.3-201ENST00000602988 553 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC009314.1-201ENST00000603871 304 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC105148.1-201ENST00000604961 409 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC144521.1-201ENST00000607148 956 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC107214.2-201ENST00000608204 634 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AL391813.2-201ENST00000609113 322 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AL050303.3-201ENST00000613704 284 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC021755.4-201ENST00000616620 456 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC009159.1-201ENST00000618386 642 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 AC009831.4-201ENST00000620744 325 ntBASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.93□□□□□ -2.1
EXOSC4Q9NPD3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 Y_RNA.245-201ENST00000364493 95 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 Y_RNA.302-201ENST00000364997 102 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 SNORA6-201ENST00000384033 151 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC107081.1-201ENST00000414975 361 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 SNRPEP9-201ENST00000436794 238 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC005094.1-201ENST00000440420 368 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 OSTCP8-201ENST00000445117 448 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AL606517.1-201ENST00000446914 387 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 MTCO1P42-201ENST00000457379 726 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 RPS27AP10-201ENST00000496103 208 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC110760.3-202ENST00000515177 371 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC022447.1-201ENST00000515358 464 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AP005902.1-201ENST00000521358 186 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC010186.2-204ENST00000537668 439 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC093012.1-202ENST00000549403 582 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 AC106782.4-201ENST00000568264 210 ntBASIC1.92□□□□□ -2.1
EXOSC4Q9NPD3 MIR3199-1-201ENST00000582434 88 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms