Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL021997.1-201ENST00000605757 193 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 MKKS-204ENST00000639674 192 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 AL109809.4-201ENST00000603520 2185 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 AC010329.5-201ENST00000623497 2174 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.02□□□□□ -2.09
USP42Q9H9J4 RNU4-13P-201ENST00000364019 141 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 RNU6-354P-201ENST00000383862 107 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 RNU6-1083P-201ENST00000384022 107 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 RNU6-610P-201ENST00000384264 107 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 PTGES3P2-201ENST00000407942 482 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 RNU2-42P-201ENST00000410697 113 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 MTCO2P5-201ENST00000422621 426 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 BX510359.4-201ENST00000423750 193 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 AL137159.1-201ENST00000452808 512 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 AMD1P1-201ENST00000457220 922 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 TOMM22P6-201ENST00000465035 409 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 AC034222.1-201ENST00000494052 532 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 AC005332.6-201ENST00000613178 446 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 MIR6504-201ENST00000613520 61 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 AL161423.1-201ENST00000613700 262 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 AL031601.2-202ENST00000622650 282 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 AL158801.5-201ENST00000623123 465 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
USP42Q9H9J4 AC233981.2-201ENST00000611524 1614 ntBASIC2.01□□□□□ -2.09
USP42Q9H9J4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2□□□□□ -2.09
USP42Q9H9J4 RN7SKP101-201ENST00000411376 320 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AC027644.1-201ENST00000419595 298 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2□□□□□ -2.09
USP42Q9H9J4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2□□□□□ -2.09
USP42Q9H9J4 MOB1AP2-201ENST00000446060 614 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2□□□□□ -2.09
USP42Q9H9J4 OFD1P7Y-201ENST00000454643 1155 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 snoU13.18-201ENST00000459483 104 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 KLF3P2-201ENST00000465138 268 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 DYNLL1P5-201ENST00000467158 270 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 HSPA8P13-201ENST00000523715 472 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC2□□□□□ -2.09
USP42Q9H9J4 AC084851.1-201ENST00000529105 249 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2□□□□□ -2.09
USP42Q9H9J4 AC015720.1-201ENST00000565251 277 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 MIR4421-201ENST00000578133 69 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 SEPT7P9-203ENST00000604116 343 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 RMST_6.1-201ENST00000611980 203 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AC243773.3-201ENST00000613270 256 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AC078880.5-201ENST00000617845 421 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 AC002550.2-201ENST00000621246 394 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 MTND1P37-201ENST00000636562 264 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2□□□□□ -2.09
USP42Q9H9J4 AC107982.1-201ENST00000507171 1300 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2□□□□□ -2.09
USP42Q9H9J4 AC010889.1-201ENST00000566193 2666 ntBASIC2□□□□□ -2.09
USP42Q9H9J4 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 SNORA7.1-201ENST00000363750 139 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 RNU6-1078P-201ENST00000364522 103 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 RNA5SP125-201ENST00000364843 120 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 Y_RNA.548-201ENST00000384656 105 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 SNORA67.6-201ENST00000391093 99 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 U3.40-201ENST00000408706 208 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 USP9YP6-201ENST00000413550 854 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 BTF3P8-201ENST00000414577 526 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 RNU7-193P-201ENST00000516723 65 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 RNU6-334P-201ENST00000517072 102 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 AL161670.1-201ENST00000554348 137 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 AC068944.2-201ENST00000610373 403 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 AC013476.2-201ENST00000614456 459 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 MIR4275-201ENST00000636486 87 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.99□□□□□ -2.09
USP42Q9H9J4 MTCO1P4-201ENST00000520516 1409 ntBASIC1.99□□□□□ -2.09
USP42Q9H9J4 AL589826.1-201ENST00000340697 249 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 RNU6-216P-201ENST00000363282 104 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 SNORA23-201ENST00000365128 182 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 MIR888-201ENST00000401186 77 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 AL355497.1-201ENST00000406262 551 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 RNU2-33P-201ENST00000410344 192 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 MTCO2P1-201ENST00000424648 477 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.98□□□□□ -2.09
USP42Q9H9J4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.98□□□□□ -2.09
USP42Q9H9J4 PSPHP1-201ENST00000450062 261 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 AC090515.1-201ENST00000465295 476 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
USP42Q9H9J4 SCARNA3-201ENST00000517097 143 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC1.98□□□□□ -2.09
USP42Q9H9J4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.98□□□□□ -2.09
USP42Q9H9J4 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.98□□□□□ -2.09
USP42Q9H9J4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.98□□□□□ -2.09
USP42Q9H9J4 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms