Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.61□□□□□ -1.99
SSX3Q99909 AC174048.1-201ENST00000603389 144 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 AP000787.2-201ENST00000604432 568 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 AL160281.1-201ENST00000605307 311 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 AC130324.3-201ENST00000614165 542 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 Z69908.1-201ENST00000622603 247 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 U2.21-201ENST00000637295 81 ntBASIC2.61□□□□□ -1.99
SSX3Q99909 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
SSX3Q99909 FARSBP1-201ENST00000435808 1778 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 RNU6-778P-201ENST00000363269 103 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 RNU6-190P-201ENST00000384154 102 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 RNU6-297P-201ENST00000384636 107 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
SSX3Q99909 AL139095.1-201ENST00000404326 391 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 RNU6-195P-201ENST00000411352 109 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 RPL26P27-201ENST00000414397 437 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 SKA2P1-201ENST00000425592 390 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 ISCA1P6-201ENST00000427740 390 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.6□□□□□ -1.99
SSX3Q99909 AC104389.3-201ENST00000445629 235 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 NANOGNBP1-201ENST00000448444 480 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 GAPDHP17-201ENST00000449858 1001 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 AC103975.1-201ENST00000482506 483 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.6□□□□□ -1.99
SSX3Q99909 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 SNORA31.18-201ENST00000517043 134 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.6□□□□□ -1.99
SSX3Q99909 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.6□□□□□ -1.99
SSX3Q99909 MIR5004-201ENST00000579078 107 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 AC022893.3-201ENST00000607665 437 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 AL512643.1-201ENST00000635735 524 ntBASIC2.6□□□□□ -1.99
SSX3Q99909 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.6□□□□□ -1.99
SSX3Q99909 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
SSX3Q99909 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SSX3Q99909 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SSX3Q99909 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SSX3Q99909 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.6□□□□□ -1.99
SSX3Q99909 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SSX3Q99909 Y_RNA.201-201ENST00000364052 96 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SSX3Q99909 RNU6-1072P-201ENST00000384703 107 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 RNU6-443P-201ENST00000384780 107 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 MIR1302-8-201ENST00000408342 128 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 SNORD88.1-201ENST00000408684 91 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC245054.2-201ENST00000415639 319 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.59□□□□□ -1.99
SSX3Q99909 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.59□□□□□ -1.99
SSX3Q99909 HMGB1P9-201ENST00000429856 646 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 RPL23AP30-201ENST00000432419 501 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC009961.2-201ENST00000435771 251 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC073614.1-201ENST00000438690 650 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.59□□□□□ -1.99
SSX3Q99909 AL136380.1-201ENST00000447970 162 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC115115.1-201ENST00000449927 248 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 MTND1P27-201ENST00000451117 902 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 FABP5P13-201ENST00000452144 328 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.59□□□□□ -1.99
SSX3Q99909 RN7SL863P-201ENST00000462370 296 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 RPL23AP11-201ENST00000475260 469 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC080014.1-201ENST00000496877 1201 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 RNU5F-8P-201ENST00000515941 111 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 SNORA18.6-201ENST00000516792 115 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 SCARNA11.3-201ENST00000517276 130 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.59□□□□□ -1.99
SSX3Q99909 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.59□□□□□ -1.99
SSX3Q99909 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.59□□□□□ -1.99
SSX3Q99909 NACAP3-201ENST00000552100 481 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 MIR3167-201ENST00000579623 85 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 NRBF2P1-201ENST00000587407 859 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.59□□□□□ -1.99
SSX3Q99909 AC015871.2-201ENST00000603605 948 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AL356280.1-201ENST00000603614 379 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AL355598.1-201ENST00000604169 202 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 AC011939.3-201ENST00000613686 466 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 Z99571.1-201ENST00000636677 394 ntBASIC2.59□□□□□ -1.99
SSX3Q99909 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SSX3Q99909 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.59□□□□□ -1.99
SSX3Q99909 AC010889.1-201ENST00000566193 2666 ntBASIC2.59□□□□□ -2
SSX3Q99909 AC110491.1-201ENST00000562191 2010 ntBASIC2.59□□□□□ -2
SSX3Q99909 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.59□□□□□ -2
SSX3Q99909 AC004520.1-201ENST00000608362 1413 ntBASIC2.59□□□□□ -2
SSX3Q99909 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.59□□□□□ -2
SSX3Q99909 TEX21P-201ENST00000447107 1476 ntBASIC2.58□□□□□ -2
SSX3Q99909 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.58□□□□□ -2
SSX3Q99909 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
SSX3Q99909 RNA5SP374-201ENST00000362939 125 ntBASIC2.58□□□□□ -2
SSX3Q99909 RNU6-641P-201ENST00000384006 107 ntBASIC2.58□□□□□ -2
SSX3Q99909 MIR558-201ENST00000384920 94 ntBASIC2.58□□□□□ -2
SSX3Q99909 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.58□□□□□ -2
SSX3Q99909 RNU2-39P-201ENST00000410604 198 ntBASIC2.58□□□□□ -2
SSX3Q99909 RNU6-1328P-201ENST00000410938 106 ntBASIC2.58□□□□□ -2
SSX3Q99909 Z92545.1-201ENST00000411782 234 ntBASIC2.58□□□□□ -2
SSX3Q99909 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms