Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC008163.1-202ENST00000636004 2889 ntBASIC0.3□□□□□ -2.36
VPS13AQ96RL7 Y_RNA.476-201ENST00000384347 108 ntBASIC0.3□□□□□ -2.36
VPS13AQ96RL7 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.3□□□□□ -2.36
VPS13AQ96RL7 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.3□□□□□ -2.36
VPS13AQ96RL7 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.3□□□□□ -2.36
VPS13AQ96RL7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.3□□□□□ -2.36
VPS13AQ96RL7 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.3□□□□□ -2.36
VPS13AQ96RL7 AC107214.2-201ENST00000608204 634 ntBASIC0.3□□□□□ -2.36
VPS13AQ96RL7 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AL356131.1-201ENST00000405826 414 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 snoU13.11-201ENST00000459219 104 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC134050.1-201ENST00000495088 933 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 ZNF29P-201ENST00000225587 168 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 RNA5SP361-201ENST00000362686 118 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 RPL23AP47-201ENST00000408017 460 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 OFD1P18Y-201ENST00000420889 959 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 snoU109.1-201ENST00000459339 135 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 CYCTP-201ENST00000504253 315 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 SNORA14.1-201ENST00000516113 141 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.29□□□□□ -2.36
VPS13AQ96RL7 AC007275.1-201ENST00000621243 671 ntBASIC0.29□□□□□ -2.36
VPS13AQ96RL7 MTND4P34-201ENST00000572715 1371 ntBASIC0.28□□□□□ -2.36
VPS13AQ96RL7 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
VPS13AQ96RL7 AC097463.2-201ENST00000421074 142 ntBASIC0.28□□□□□ -2.36
VPS13AQ96RL7 AL606490.4-201ENST00000423117 127 ntBASIC0.28□□□□□ -2.36
VPS13AQ96RL7 RSU1P2-202ENST00000437884 485 ntBASIC0.28□□□□□ -2.37
VPS13AQ96RL7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC0.28□□□□□ -2.37
VPS13AQ96RL7 AC067940.1-201ENST00000458411 300 ntBASIC0.28□□□□□ -2.37
VPS13AQ96RL7 AC025768.1-201ENST00000510057 267 ntBASIC0.28□□□□□ -2.37
VPS13AQ96RL7 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.28□□□□□ -2.37
VPS13AQ96RL7 CYCSP2-201ENST00000558168 301 ntBASIC0.28□□□□□ -2.37
VPS13AQ96RL7 MIR10B-201ENST00000385011 110 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 MIR1207-201ENST00000408249 87 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC0.27□□□□□ -2.37
VPS13AQ96RL7 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.27□□□□□ -2.37
VPS13AQ96RL7 MTCO1P53-201ENST00000441633 699 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.27□□□□□ -2.37
VPS13AQ96RL7 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
VPS13AQ96RL7 AC006518.2-201ENST00000542513 940 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 PRR13P7-201ENST00000605538 430 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 AP003122.6-201ENST00000623831 495 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
VPS13AQ96RL7 SNORA50A-201ENST00000384225 134 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 RNA5SP252-201ENST00000391131 119 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 MTCO3P4-201ENST00000419236 787 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 AC093027.1-201ENST00000546698 429 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 AC084757.1-201ENST00000559987 490 ntBASIC0.27□□□□□ -2.37
VPS13AQ96RL7 RNA5SP98-201ENST00000363158 137 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AC096632.1-201ENST00000427395 310 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AL157398.1-201ENST00000452981 186 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AL669831.4-202ENST00000590817 238 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 VN1R82P-201ENST00000601481 356 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
VPS13AQ96RL7 U3.8-201ENST00000363675 217 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AC097493.1-201ENST00000463958 372 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AL390240.1-201ENST00000612950 384 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AC109454.4-201ENST00000623411 649 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 AL137003.2-201ENST00000606924 2538 ntBASIC0.26□□□□□ -2.37
VPS13AQ96RL7 MIR214-201ENST00000385214 110 ntBASIC0.25□□□□□ -2.37
VPS13AQ96RL7 AL121578.1-201ENST00000428051 892 ntBASIC0.25□□□□□ -2.37
VPS13AQ96RL7 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.25□□□□□ -2.37
VPS13AQ96RL7 VN1R81P-201ENST00000602085 372 ntBASIC0.25□□□□□ -2.37
VPS13AQ96RL7 MTCO2P22-201ENST00000603246 681 ntBASIC0.25□□□□□ -2.37
VPS13AQ96RL7 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
VPS13AQ96RL7 PIGPP2-201ENST00000411569 458 ntBASIC0.25□□□□□ -2.37
VPS13AQ96RL7 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.25□□□□□ -2.37
VPS13AQ96RL7 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.25□□□□□ -2.37
VPS13AQ96RL7 AC027575.1-201ENST00000481064 460 ntBASIC0.25□□□□□ -2.37
VPS13AQ96RL7 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC0.25□□□□□ -2.37
VPS13AQ96RL7 AC087477.1-201ENST00000465747 340 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13AQ96RL7 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13AQ96RL7 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.24□□□□□ -2.37
VPS13AQ96RL7 MIR4658-201ENST00000584344 65 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 MIR6130-201ENST00000619419 109 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 AC022079.2-201ENST00000619739 566 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.24□□□□□ -2.37
VPS13AQ96RL7 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.24□□□□□ -2.37
VPS13AQ96RL7 OR5AQ1P-203ENST00000641818 1529 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 SNX3P1X-201ENST00000414887 175 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13AQ96RL7 MIR4287-201ENST00000579398 78 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 AC084824.5-201ENST00000612009 413 ntBASIC0.24□□□□□ -2.37
VPS13AQ96RL7 RNU6-45P-201ENST00000384471 107 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms