Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 COX6CP18-201ENST00000448769 222 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.37□□□□□ -2.19
USP54Q70EL1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.37□□□□□ -2.19
USP54Q70EL1 AL049714.1-201ENST00000466686 347 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 MTCO1P31-201ENST00000506355 492 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 RNU6-928P-201ENST00000516876 104 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 SNORA31.25-201ENST00000517242 134 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 SCARNA11.3-201ENST00000517276 130 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.37□□□□□ -2.19
USP54Q70EL1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.37□□□□□ -2.19
USP54Q70EL1 AC025165.5-201ENST00000602802 578 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC1.37□□□□□ -2.19
USP54Q70EL1 AL592148.2-201ENST00000612210 372 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
USP54Q70EL1 AC010329.5-201ENST00000623497 2174 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.37□□□□□ -2.19
USP54Q70EL1 RNU4-42P-201ENST00000364738 142 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 MIR325-201ENST00000385260 98 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.36□□□□□ -2.19
USP54Q70EL1 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
USP54Q70EL1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.36□□□□□ -2.19
USP54Q70EL1 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC1.36□□□□□ -2.19
USP54Q70EL1 AC004383.1-201ENST00000438135 289 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 THAP5P1-201ENST00000439089 262 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC016691.1-201ENST00000441321 413 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.36□□□□□ -2.19
USP54Q70EL1 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.36□□□□□ -2.19
USP54Q70EL1 AL592447.1-201ENST00000447592 540 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 MTATP6P7-201ENST00000453315 681 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 MTCO3P2-201ENST00000457365 171 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 PMCHL2-203ENST00000457791 237 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC020699.1-201ENST00000505161 445 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.36□□□□□ -2.19
USP54Q70EL1 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.36□□□□□ -2.19
USP54Q70EL1 RNU5F-8P-201ENST00000515941 111 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC095057.3-201ENST00000567102 1157 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC040174.2-201ENST00000602701 465 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 AC025048.6-202ENST00000627667 438 ntBASIC1.36□□□□□ -2.19
USP54Q70EL1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
USP54Q70EL1 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
USP54Q70EL1 Y_RNA.295-201ENST00000364918 102 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 RNU6-220P-201ENST00000390919 107 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AP002784.2-201ENST00000397300 549 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 TAF9BP2-201ENST00000400856 499 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.35□□□□□ -2.19
USP54Q70EL1 EIF4EP4-201ENST00000424916 578 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AC112518.2-201ENST00000508565 425 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 RNU5A-7P-201ENST00000515979 116 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 SNORA31.16-201ENST00000516773 139 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.35□□□□□ -2.19
USP54Q70EL1 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.35□□□□□ -2.19
USP54Q70EL1 VN1R88P-201ENST00000596787 292 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AC006213.4-201ENST00000616184 634 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AC090772.4-201ENST00000623599 362 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
USP54Q70EL1 RNU1-62P-201ENST00000362599 164 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 Y_RNA.393-201ENST00000383936 102 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
USP54Q70EL1 CIR1P3-201ENST00000405137 479 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 Z80107.1-201ENST00000436830 412 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC1.35□□□□□ -2.19
USP54Q70EL1 COL6A4P2-205ENST00000509855 506 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 RNU6-202P-201ENST00000515998 96 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AC104997.1-201ENST00000519761 717 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.35□□□□□ -2.19
USP54Q70EL1 MIR4529-201ENST00000578110 78 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 MIR4287-201ENST00000579398 78 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AL031176.1-201ENST00000604554 466 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 AL450336.1-201ENST00000605180 586 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 SNORD114-21-201ENST00000606412 72 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 SDR42E1P2-201ENST00000614861 481 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 SDR42E1P4-201ENST00000620894 481 ntBASIC1.35□□□□□ -2.19
USP54Q70EL1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
USP54Q70EL1 SNORD51-201ENST00000384320 80 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 RNY1P4-201ENST00000384595 115 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AL355615.1-201ENST00000406187 641 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 RNU2-15P-201ENST00000410692 191 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 HMGB1P9-201ENST00000429856 646 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.34□□□□□ -2.19
USP54Q70EL1 GDI2P2-201ENST00000445131 608 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
USP54Q70EL1 OR9N1P-202ENST00000494289 481 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.34□□□□□ -2.19
USP54Q70EL1 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.34□□□□□ -2.19
USP54Q70EL1 AC096745.1-201ENST00000509945 370 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.34□□□□□ -2.19
USP54Q70EL1 RNU2-19P-201ENST00000517288 84 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AC087854.1-201ENST00000519706 414 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AP004247.1-201ENST00000531556 1289 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.34□□□□□ -2.19
USP54Q70EL1 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms