Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 AL159153.1-201ENST00000619688 317 ntBASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 AC130454.1-201ENST00000622948 401 ntBASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 NOL8P1-201ENST00000508336 3529 ntBASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 AC026951.1-201ENST00000559530 2459 ntBASIC4.28□□□□□ -1.72
RNF111Q6ZNA4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 MTND5P6-201ENST00000422338 1798 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RNU6-1167P-201ENST00000363227 94 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 SNORD113.2-201ENST00000364166 89 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RNU6-395P-201ENST00000365662 106 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 SNORA70F-201ENST00000384142 135 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 Y_RNA.515-201ENST00000384535 112 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 MIR628-201ENST00000385229 95 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AL591034.2-201ENST00000402839 359 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RNU4-61P-201ENST00000411243 107 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 MTCO1P39-201ENST00000426148 480 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 MTND4LP30-201ENST00000454092 297 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC133134.1-201ENST00000466800 359 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RPL39P38-201ENST00000467018 153 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 HMGB1P35-201ENST00000503360 598 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC025554.1-201ENST00000505641 188 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 NDUFB4P9-201ENST00000511646 388 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RNU6-1023P-201ENST00000516137 106 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 Y_RNA.673-201ENST00000516306 88 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RNU4-60P-201ENST00000517239 135 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 HMGB1P14-201ENST00000557424 591 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AMZ2P1-203ENST00000565833 850 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 RPL23AP97-201ENST00000568955 471 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AL390123.1-201ENST00000603216 237 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AL160290.3-201ENST00000604869 165 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 MIR432-201ENST00000606207 94 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 MFSD8-242ENST00000641690 4199 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC027290.2-201ENST00000623210 18662 ntBASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.27□□□□□ -1.73
RNF111Q6ZNA4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC125257.1-201ENST00000560400 2930 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC021146.4-201ENST00000309229 279 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 RNA5SP505-201ENST00000364748 108 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 SAR1AP2-201ENST00000392696 594 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 SDHCP2-201ENST00000398565 501 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 RNU6-1025P-201ENST00000410629 104 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 RPS12P10-201ENST00000427031 377 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 HMGB3P17-201ENST00000504195 649 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 PARP4P3-201ENST00000510265 317 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC008958.1-201ENST00000511047 682 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AP001781.1-201ENST00000530977 207 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 FAM60BP-201ENST00000578364 658 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AL512605.2-201ENST00000592972 256 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AC009314.1-201ENST00000603871 304 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AL161798.1-201ENST00000604630 131 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 MIR6820-201ENST00000611508 62 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 RN7SL722P-201ENST00000617780 284 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 RN7SL565P-201ENST00000618246 284 ntBASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF111Q6ZNA4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms