Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.7□□□□□ -2.3
USF3Q68DE3 RNA5SP258-201ENST00000362750 119 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 SNORD26-201ENST00000384147 75 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 RN7SKP158-201ENST00000410453 326 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 HMGB1P9-201ENST00000429856 646 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.7□□□□□ -2.3
USF3Q68DE3 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC0.7□□□□□ -2.3
USF3Q68DE3 RNU6-420P-201ENST00000458780 107 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 RPS20P20-201ENST00000460498 340 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 AC104108.1-201ENST00000509930 412 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.7□□□□□ -2.3
USF3Q68DE3 AC022513.1-201ENST00000624512 117 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AP003400.5-201ENST00000624827 617 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 TPTE2P4-201ENST00000258589 1605 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
USF3Q68DE3 RNU1-72P-201ENST00000362976 153 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC097499.1-201ENST00000444277 208 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC0.69□□□□□ -2.3
USF3Q68DE3 RPL23AP3-201ENST00000453844 468 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 SUMO2P2-201ENST00000456482 255 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC007742.2-201ENST00000618226 398 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC010329.5-201ENST00000623497 2174 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 RNU5D-1-201ENST00000363299 116 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 U3.20-201ENST00000390909 217 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 MRPL35P3-201ENST00000421557 364 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 DYNLL1P5-201ENST00000467158 270 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC111000.5-201ENST00000506559 1178 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC104057.1-201ENST00000515547 497 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.69□□□□□ -2.3
USF3Q68DE3 AC010186.2-204ENST00000537668 439 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 HMGB1P14-201ENST00000557424 591 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC104229.1-201ENST00000561364 255 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.69□□□□□ -2.3
USF3Q68DE3 MIR4698-201ENST00000577795 80 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC025588.2-201ENST00000604851 466 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 AC005021.1-201ENST00000608730 355 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 MIR924-201ENST00000638017 53 ntBASIC0.69□□□□□ -2.3
USF3Q68DE3 RNU6-19P-201ENST00000384718 107 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 PRRC2CP1-201ENST00000404428 159 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 Z86062.1-201ENST00000406773 777 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.68□□□□□ -2.3
USF3Q68DE3 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.68□□□□□ -2.3
USF3Q68DE3 SNORA48.11-201ENST00000517015 89 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 NIFKP8-201ENST00000560500 874 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 AL592148.2-201ENST00000612210 372 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
USF3Q68DE3 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.68□□□□□ -2.3
USF3Q68DE3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.68□□□□□ -2.3
USF3Q68DE3 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.68□□□□□ -2.3
USF3Q68DE3 MIR330-201ENST00000362196 94 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 SNORA23-201ENST00000365128 182 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.68□□□□□ -2.3
USF3Q68DE3 RNU6-1074P-201ENST00000383995 104 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 RNU6-167P-201ENST00000384292 106 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 MIR934-201ENST00000401241 83 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 MIR1197-201ENST00000408818 88 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.68□□□□□ -2.3
USF3Q68DE3 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.68□□□□□ -2.3
USF3Q68DE3 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC0.68□□□□□ -2.3
USF3Q68DE3 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.68□□□□□ -2.3
USF3Q68DE3 AL353718.1-201ENST00000451028 517 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 AC104806.1-201ENST00000508720 308 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 SNORA31.18-201ENST00000517043 134 ntBASIC0.68□□□□□ -2.3
USF3Q68DE3 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.68□□□□□ -2.3
USF3Q68DE3 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.68□□□□□ -2.3
USF3Q68DE3 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.68□□□□□ -2.3
USF3Q68DE3 RNU6-730P-201ENST00000383954 104 ntBASIC0.67□□□□□ -2.3
USF3Q68DE3 AL161449.1-201ENST00000414531 1199 ntBASIC0.67□□□□□ -2.3
USF3Q68DE3 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.67□□□□□ -2.3
USF3Q68DE3 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.67□□□□□ -2.3
USF3Q68DE3 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC0.67□□□□□ -2.3
USF3Q68DE3 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
USF3Q68DE3 RNU6-1282P-201ENST00000516735 96 ntBASIC0.67□□□□□ -2.3
USF3Q68DE3 HAUS1P3-201ENST00000523909 662 ntBASIC0.67□□□□□ -2.3
USF3Q68DE3 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC0.67□□□□□ -2.3
USF3Q68DE3 AL391261.3-201ENST00000557194 520 ntBASIC0.67□□□□□ -2.3
USF3Q68DE3 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC0.67□□□□□ -2.3
USF3Q68DE3 AL356585.4-201ENST00000623078 1229 ntBASIC0.67□□□□□ -2.3
USF3Q68DE3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
USF3Q68DE3 RNA5SP62-201ENST00000363457 110 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 U3.13-201ENST00000364804 214 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms