Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU5F-8P-201ENST00000515941 111 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC109329.2-201ENST00000519658 482 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 MRPS36P5-201ENST00000551909 298 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 NACAP3-201ENST00000552100 481 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC023824.2-201ENST00000566185 400 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AL645944.1-201ENST00000603857 493 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC007621.1-201ENST00000604544 437 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AL589743.7-201ENST00000612637 233 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC025594.3-201ENST00000613068 790 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 MIR6817-201ENST00000615588 66 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 HMGB1P24-202ENST00000615653 685 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC007671.2-201ENST00000637344 619 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 MIR21-201ENST00000362134 72 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 SNORD114-30-201ENST00000364448 72 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AL359511.1-201ENST00000402970 211 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 SEPT2P1-201ENST00000419651 180 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 RPL37P21-201ENST00000435890 276 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 NEFMP1-201ENST00000443423 1006 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 OSTCP8-201ENST00000445117 448 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AL513328.1-201ENST00000446460 224 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 TRBV1-201ENST00000476502 284 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 RBM43P1-201ENST00000476891 1081 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC139453.3-201ENST00000493276 369 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 HMGB3P3-201ENST00000510526 400 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC112673.1-201ENST00000513168 575 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 RN7SKP265-201ENST00000516448 223 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 RNA5SP148-201ENST00000516527 94 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 RNU6-201P-201ENST00000517100 61 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 RPS3AP4-201ENST00000555161 764 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC024619.4-201ENST00000580924 316 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC234772.3-201ENST00000602277 528 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 AC092192.1-201ENST00000633154 1018 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 MIR3199-2-201ENST00000636243 86 ntBASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC40Q4G0X9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 RNA5SP68-201ENST00000363885 119 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 RNU6-809P-201ENST00000384461 107 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AF274854.1-201ENST00000413236 615 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AL353729.1-201ENST00000425044 720 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AL353777.1-201ENST00000425552 326 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC022447.1-201ENST00000515358 464 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 RNU6-678P-201ENST00000516832 109 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC008751.2-201ENST00000597885 980 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AL358072.1-201ENST00000604156 575 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AL355598.1-201ENST00000604169 202 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC007363.1-201ENST00000604736 620 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AP000860.1-201ENST00000605250 559 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 uc_338.12-201ENST00000616344 181 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC007998.5-201ENST00000622938 237 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 AC080128.1-201ENST00000474389 1917 ntBASIC2.62□□□□□ -1.99
CCDC40Q4G0X9 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 MTND4P27-201ENST00000450813 1354 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC004520.1-201ENST00000608362 1413 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 RAC1P6-201ENST00000423911 575 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 LINC00888-204ENST00000487386 421 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC026436.1-201ENST00000510537 270 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 RNA5SP82-201ENST00000516707 92 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 RNU6-703P-201ENST00000516946 107 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 ARL2BPP2-201ENST00000550907 489 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC021739.1-201ENST00000559631 174 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms