Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.62□□□□□ -1.67
LIG3P49916 U8.20-201ENST00000459445 131 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RPL21P13-201ENST00000488305 481 ntBASIC4.62□□□□□ -1.67
LIG3P49916 SNORA31.8-201ENST00000516327 108 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RAB9BP1-201ENST00000519581 626 ntBASIC4.62□□□□□ -1.67
LIG3P49916 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.62□□□□□ -1.67
LIG3P49916 AC022616.4-201ENST00000522985 181 ntBASIC4.62□□□□□ -1.67
LIG3P49916 CBX3P8-201ENST00000532412 525 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AL355297.3-201ENST00000604082 446 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AC124312.5-201ENST00000604451 268 ntBASIC4.62□□□□□ -1.67
LIG3P49916 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.62□□□□□ -1.67
LIG3P49916 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-6P-201ENST00000606623 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 MIR3976-201ENST00000606807 139 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AC100812.1-201ENST00000607622 580 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AC090425.1-201ENST00000610007 140 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AL023881.1-201ENST00000621088 301 ntBASIC4.62□□□□□ -1.67
LIG3P49916 MIR7641-1-201ENST00000627518 61 ntBASIC4.62□□□□□ -1.67
LIG3P49916 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIG3P49916 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIG3P49916 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIG3P49916 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIG3P49916 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIG3P49916 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.61□□□□□ -1.67
LIG3P49916 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.61□□□□□ -1.67
LIG3P49916 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIG3P49916 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG3P49916 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIG3P49916 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIG3P49916 AC021146.4-201ENST00000309229 279 ntBASIC4.61□□□□□ -1.67
LIG3P49916 RNU6-238P-201ENST00000363313 106 ntBASIC4.61□□□□□ -1.67
LIG3P49916 Y_RNA.152-201ENST00000363578 100 ntBASIC4.61□□□□□ -1.67
LIG3P49916 SNORA7.2-201ENST00000364446 145 ntBASIC4.61□□□□□ -1.67
LIG3P49916 SNORD14B-201ENST00000364533 90 ntBASIC4.61□□□□□ -1.67
LIG3P49916 Y_RNA.380-201ENST00000365663 111 ntBASIC4.61□□□□□ -1.67
LIG3P49916 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.61□□□□□ -1.67
LIG3P49916 AL022722.2-201ENST00000402519 180 ntBASIC4.61□□□□□ -1.67
LIG3P49916 AL138885.1-201ENST00000405921 675 ntBASIC4.61□□□□□ -1.67
LIG3P49916 RNA5SP306-201ENST00000411087 107 ntBASIC4.61□□□□□ -1.67
LIG3P49916 Y_RNA.623-201ENST00000411128 95 ntBASIC4.61□□□□□ -1.67
LIG3P49916 AC016397.1-201ENST00000412463 242 ntBASIC4.61□□□□□ -1.67
LIG3P49916 RPEP3-201ENST00000425462 676 ntBASIC4.61□□□□□ -1.67
LIG3P49916 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG3P49916 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.61□□□□□ -1.67
LIG3P49916 HMGN2P21-201ENST00000447764 270 ntBASIC4.61□□□□□ -1.67
LIG3P49916 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.61□□□□□ -1.67
LIG3P49916 AC133134.1-201ENST00000466800 359 ntBASIC4.61□□□□□ -1.67
LIG3P49916 MTND4LP22-201ENST00000508209 276 ntBASIC4.61□□□□□ -1.67
LIG3P49916 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG3P49916 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG3P49916 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.61□□□□□ -1.67
LIG3P49916 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIG3P49916 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.61□□□□□ -1.67
LIG3P49916 CPDP1-201ENST00000579660 283 ntBASIC4.61□□□□□ -1.67
LIG3P49916 MIR4715-201ENST00000584117 79 ntBASIC4.61□□□□□ -1.67
LIG3P49916 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG3P49916 AL355598.1-201ENST00000604169 202 ntBASIC4.61□□□□□ -1.67
LIG3P49916 AC090132.2-201ENST00000615881 347 ntBASIC4.61□□□□□ -1.67
LIG3P49916 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIG3P49916 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.61□□□□□ -1.67
LIG3P49916 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIG3P49916 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIG3P49916 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
LIG3P49916 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIG3P49916 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIG3P49916 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.61□□□□□ -1.67
LIG3P49916 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
LIG3P49916 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LIG3P49916 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LIG3P49916 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 LINC02471-203ENST00000641941 4752 ntBASIC4.6□□□□□ -1.67
LIG3P49916 RNU1-15P-201ENST00000353977 144 ntBASIC4.6□□□□□ -1.67
LIG3P49916 Y_RNA.48-201ENST00000362710 103 ntBASIC4.6□□□□□ -1.67
LIG3P49916 RNY1P16-201ENST00000363063 111 ntBASIC4.6□□□□□ -1.67
LIG3P49916 Y_RNA.556-201ENST00000384677 113 ntBASIC4.6□□□□□ -1.67
LIG3P49916 MIR129-1-201ENST00000384972 72 ntBASIC4.6□□□□□ -1.67
LIG3P49916 RNU6-1156P-201ENST00000410365 100 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 AC108032.1-201ENST00000416706 207 ntBASIC4.6□□□□□ -1.67
LIG3P49916 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.6□□□□□ -1.67
LIG3P49916 AL627311.1-201ENST00000431514 115 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 AC009220.1-201ENST00000451614 275 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AL583843.1-201ENST00000456070 346 ntBASIC4.6□□□□□ -1.67
LIG3P49916 U8.21-201ENST00000459536 136 ntBASIC4.6□□□□□ -1.67
LIG3P49916 SNORA70.16-201ENST00000516390 95 ntBASIC4.6□□□□□ -1.67
LIG3P49916 RNU7-4P-201ENST00000516961 62 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AC009812.2-201ENST00000517657 457 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 AC107016.1-201ENST00000550463 337 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.6□□□□□ -1.67
LIG3P49916 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.6□□□□□ -1.67
LIG3P49916 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.6□□□□□ -1.67
LIG3P49916 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.6□□□□□ -1.67
LIG3P49916 AC016727.2-201ENST00000603988 621 ntBASIC4.6□□□□□ -1.67
LIG3P49916 AC012603.1-201ENST00000606424 528 ntBASIC4.6□□□□□ -1.67
LIG3P49916 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 262.2 ms