Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ARF4P4-201ENST00000439608 520 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 SDCBPP1-201ENST00000440192 890 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 KATNBL1P3-201ENST00000443475 909 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AC079776.3-201ENST00000450665 370 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 MTND2P24-201ENST00000453434 806 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.8□□□□□ -2.12
COL18A1P39060 RPS27P26-201ENST00000494583 239 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AC093801.2-201ENST00000503966 1050 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.8□□□□□ -2.12
COL18A1P39060 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.8□□□□□ -2.12
COL18A1P39060 AP003168.1-201ENST00000530091 307 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AC084364.2-201ENST00000546924 395 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.8□□□□□ -2.12
COL18A1P39060 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.8□□□□□ -2.12
COL18A1P39060 AC023825.1-201ENST00000566704 1030 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 MIR5708-201ENST00000579723 85 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.8□□□□□ -2.12
COL18A1P39060 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.8□□□□□ -2.12
COL18A1P39060 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.8□□□□□ -2.12
COL18A1P39060 AP001429.1-201ENST00000602568 530 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AP002802.2-201ENST00000605877 235 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AC010975.3-201ENST00000618727 978 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AC253576.2-201ENST00000618815 580 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 AL596245.1-201ENST00000618994 362 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 MIR1322-201ENST00000638013 71 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 OR5H6-203ENST00000642105 978 ntBASIC1.8□□□□□ -2.12
COL18A1P39060 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL18A1P39060 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL18A1P39060 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL18A1P39060 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL18A1P39060 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AL049641.1-201ENST00000441055 1948 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 RNU6-28P-201ENST00000362378 107 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 SNORD65.1-201ENST00000390889 71 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 RPS3AP24-201ENST00000407896 734 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.79□□□□□ -2.12
COL18A1P39060 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.79□□□□□ -2.12
COL18A1P39060 PTGES3P1-201ENST00000439531 483 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 HMGN2P18-201ENST00000450680 270 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 RNU7-23P-201ENST00000459465 62 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AC114981.1-201ENST00000503897 678 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.79□□□□□ -2.12
COL18A1P39060 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.79□□□□□ -2.12
COL18A1P39060 AC087808.1-201ENST00000520501 361 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 NDUFS5P6-201ENST00000529136 295 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.79□□□□□ -2.12
COL18A1P39060 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC1.79□□□□□ -2.12
COL18A1P39060 AC004067.1-201ENST00000608733 700 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AC093838.1-201ENST00000613014 469 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AC243773.3-201ENST00000613270 256 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AL449363.1-201ENST00000617815 186 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 UCA1.1-201ENST00000620952 75 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AC120349.2-201ENST00000625002 298 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 AL159972.1-201ENST00000625150 448 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.79□□□□□ -2.12
COL18A1P39060 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
COL18A1P39060 CDR1-202ENST00000625883 1485 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
COL18A1P39060 SDAD1P2-201ENST00000441308 2028 ntBASIC1.79□□□□□ -2.12
COL18A1P39060 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.79□□□□□ -2.12
COL18A1P39060 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
COL18A1P39060 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
COL18A1P39060 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.78□□□□□ -2.12
COL18A1P39060 ANAPC10P1-201ENST00000395991 556 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.78□□□□□ -2.12
COL18A1P39060 RPS15AP27-201ENST00000449183 343 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 RPL31P41-201ENST00000477967 372 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 AC096571.1-202ENST00000506634 735 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 MTCO3P27-201ENST00000514397 196 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 SNORA31.18-201ENST00000517043 134 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 SNORA31.22-201ENST00000517204 135 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 DEFB130C-202ENST00000530001 230 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC1.78□□□□□ -2.12
COL18A1P39060 AC087897.1-201ENST00000550134 156 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 AC124947.2-202ENST00000552735 133 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 MIR151B-201ENST00000584249 96 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 AC069304.2-201ENST00000605154 435 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.78□□□□□ -2.12
COL18A1P39060 AC090132.2-201ENST00000615881 347 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 AP003399.1-201ENST00000637534 361 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.78□□□□□ -2.12
COL18A1P39060 CR848007.1-201ENST00000442354 1699 ntBASIC1.78□□□□□ -2.12
COL18A1P39060 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
COL18A1P39060 RNU6-461P-201ENST00000364195 107 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 MIR325-201ENST00000385260 98 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 MTCO1P56-201ENST00000401674 224 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
COL18A1P39060 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 MTND2P20-201ENST00000440805 661 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 SNRPGP13-201ENST00000442212 177 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 Y_RNA.675-201ENST00000516389 149 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 SCARNA15.2-201ENST00000516409 127 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 RNU6-928P-201ENST00000516876 104 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.77□□□□□ -2.13
COL18A1P39060 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.77□□□□□ -2.13
COL18A1P39060 MTND4LP25-201ENST00000570218 163 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 MTATP6P3-201ENST00000581686 676 ntBASIC1.77□□□□□ -2.13
COL18A1P39060 MIR3616-201ENST00000584070 92 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms