Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC0.63□□□□□ -2.31
COL6A3P12111 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC0.63□□□□□ -2.31
COL6A3P12111 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.63□□□□□ -2.31
COL6A3P12111 Y_RNA.711-201ENST00000516993 102 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 MIR548AX-201ENST00000580117 73 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 SDR42E1P2-201ENST00000614861 481 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 SDR42E1P4-201ENST00000620894 481 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC073308.1-201ENST00000623696 305 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC0.63□□□□□ -2.31
COL6A3P12111 AC091812.1-201ENST00000432235 1948 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
COL6A3P12111 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC0.63□□□□□ -2.31
COL6A3P12111 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC0.63□□□□□ -2.31
COL6A3P12111 SUMO2P2-201ENST00000456482 255 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC0.63□□□□□ -2.31
COL6A3P12111 COL6A4P2-205ENST00000509855 506 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC0.63□□□□□ -2.31
COL6A3P12111 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.63□□□□□ -2.31
COL6A3P12111 AL355812.1-201ENST00000603215 216 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC013470.4-201ENST00000619978 986 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
COL6A3P12111 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
COL6A3P12111 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.62□□□□□ -2.31
COL6A3P12111 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.62□□□□□ -2.31
COL6A3P12111 AC117454.1-201ENST00000491120 168 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC0.62□□□□□ -2.31
COL6A3P12111 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC0.62□□□□□ -2.31
COL6A3P12111 AL096840.1-201ENST00000603287 93 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC0.62□□□□□ -2.31
COL6A3P12111 AC109809.1-201ENST00000619665 545 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 AC007792.1-201ENST00000623023 402 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 MIR6866-201ENST00000638146 69 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
COL6A3P12111 AL049641.1-201ENST00000441055 1948 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 RNU4-67P-201ENST00000364569 141 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 RNU6-1184P-201ENST00000384588 108 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 SFR1P1-201ENST00000403720 688 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 SDAD1P3-201ENST00000427380 333 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 AL356867.1-201ENST00000429623 299 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.62□□□□□ -2.31
COL6A3P12111 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.62□□□□□ -2.31
COL6A3P12111 CYP4A27P-201ENST00000567218 190 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 AC006249.1-201ENST00000621223 471 ntBASIC0.62□□□□□ -2.31
COL6A3P12111 SNORA51.6-201ENST00000384151 125 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
COL6A3P12111 AL355615.1-201ENST00000406187 641 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 SNRPEP7-201ENST00000438350 220 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 SPINT5P-201ENST00000448174 155 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 RNU1-98P-201ENST00000458992 160 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 RPL30P5-201ENST00000494923 336 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 MTCO3P24-201ENST00000572729 782 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AC002545.1-201ENST00000592511 181 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 RLIMP2-201ENST00000427891 1563 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AC009302.1-201ENST00000417147 390 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.61□□□□□ -2.31
COL6A3P12111 RNU6-928P-201ENST00000516876 104 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.61□□□□□ -2.31
COL6A3P12111 MIR4320-201ENST00000636981 65 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC0.61□□□□□ -2.31
COL6A3P12111 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC0.61□□□□□ -2.31
COL6A3P12111 UBBP3-201ENST00000445497 241 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AL035666.1-201ENST00000446195 348 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AC084033.1-201ENST00000550830 633 ntBASIC0.61□□□□□ -2.31
COL6A3P12111 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC0.61□□□□□ -2.31
COL6A3P12111 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
COL6A3P12111 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC0.6□□□□□ -2.31
COL6A3P12111 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AC009296.1-201ENST00000443146 155 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC0.6□□□□□ -2.31
COL6A3P12111 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.6□□□□□ -2.31
COL6A3P12111 LINC00557-201ENST00000563184 1279 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.6□□□□□ -2.31
COL6A3P12111 MIR4512-201ENST00000583257 77 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AP001180.6-201ENST00000584918 159 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AL161734.1-201ENST00000609720 557 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AC132825.8-201ENST00000640783 297 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.6□□□□□ -2.31
COL6A3P12111 AL022578.1-201ENST00000439330 1433 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 RNU6-339P-201ENST00000384310 107 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AC016717.1-201ENST00000448918 286 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.6□□□□□ -2.31
COL6A3P12111 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
COL6A3P12111 RNA5SP291-201ENST00000517222 105 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.6□□□□□ -2.31
COL6A3P12111 AC090953.1-201ENST00000604305 1092 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 AL355802.3-201ENST00000607571 545 ntBASIC0.6□□□□□ -2.31
COL6A3P12111 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
COL6A3P12111 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
COL6A3P12111 RNY4P28-201ENST00000365281 93 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 SNORD23.1-201ENST00000408212 104 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.59□□□□□ -2.31
COL6A3P12111 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.59□□□□□ -2.31
COL6A3P12111 AC009318.3-201ENST00000616916 503 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 AL596211.1-201ENST00000569873 2277 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 MTND4P34-201ENST00000572715 1371 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 AC006461.1-201ENST00000412637 326 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.59□□□□□ -2.31
COL6A3P12111 RPL39P29-201ENST00000447779 157 ntBASIC0.59□□□□□ -2.31
COL6A3P12111 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.59□□□□□ -2.31
COL6A3P12111 SNORD108-201ENST00000459332 71 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms