Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU5E-6P-201ENST00000365574 115 ntBASIC3.18□□□□□ -1.9
LDB3O75112 RNU6-831P-201ENST00000384548 107 ntBASIC3.18□□□□□ -1.9
LDB3O75112 MIR183-201ENST00000384958 110 ntBASIC3.18□□□□□ -1.9
LDB3O75112 MIR514A2-201ENST00000385131 88 ntBASIC3.18□□□□□ -1.9
LDB3O75112 MIR514A3-201ENST00000385132 88 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC110754.1-201ENST00000399740 601 ntBASIC3.18□□□□□ -1.9
LDB3O75112 RN7SKP32-201ENST00000410167 303 ntBASIC3.18□□□□□ -1.9
LDB3O75112 MTND3P8-201ENST00000412909 339 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC126124.2-201ENST00000413542 321 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.18□□□□□ -1.9
LDB3O75112 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.18□□□□□ -1.9
LDB3O75112 AC093106.2-201ENST00000428212 385 ntBASIC3.18□□□□□ -1.9
LDB3O75112 MED13P1-201ENST00000428342 171 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AL365400.1-201ENST00000431854 640 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AL159987.2-201ENST00000432754 307 ntBASIC3.18□□□□□ -1.9
LDB3O75112 HMGB3P11-201ENST00000440127 604 ntBASIC3.18□□□□□ -1.9
LDB3O75112 RPL26P6-201ENST00000440913 438 ntBASIC3.18□□□□□ -1.9
LDB3O75112 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LDB3O75112 AL118520.1-201ENST00000450770 291 ntBASIC3.18□□□□□ -1.9
LDB3O75112 RPS4XP2-201ENST00000458402 793 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.18□□□□□ -1.9
LDB3O75112 AC008155.2-201ENST00000464337 397 ntBASIC3.18□□□□□ -1.9
LDB3O75112 RPL23AP67-201ENST00000465341 474 ntBASIC3.18□□□□□ -1.9
LDB3O75112 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LDB3O75112 AC010631.1-201ENST00000474150 156 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.18□□□□□ -1.9
LDB3O75112 RPL38P4-201ENST00000502376 214 ntBASIC3.18□□□□□ -1.9
LDB3O75112 HMGB1P41-201ENST00000520234 440 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.18□□□□□ -1.9
LDB3O75112 AC022690.1-201ENST00000526681 550 ntBASIC3.18□□□□□ -1.9
LDB3O75112 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.18□□□□□ -1.9
LDB3O75112 AC093012.1-202ENST00000549403 582 ntBASIC3.18□□□□□ -1.9
LDB3O75112 OR4H12P-201ENST00000556269 907 ntBASIC3.18□□□□□ -1.9
LDB3O75112 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.18□□□□□ -1.9
LDB3O75112 TGIF1P1-201ENST00000558095 802 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.18□□□□□ -1.9
LDB3O75112 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.18□□□□□ -1.9
LDB3O75112 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.18□□□□□ -1.9
LDB3O75112 RNU6-89P-201ENST00000606519 100 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC019176.2-201ENST00000611579 315 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AL110115.1-201ENST00000614396 364 ntBASIC3.18□□□□□ -1.9
LDB3O75112 AC012314.7-201ENST00000619693 93 ntBASIC3.18□□□□□ -1.9
LDB3O75112 MIR6075-201ENST00000620782 95 ntBASIC3.18□□□□□ -1.9
LDB3O75112 U6.105-201ENST00000637379 88 ntBASIC3.18□□□□□ -1.9
LDB3O75112 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.18□□□□□ -1.9
LDB3O75112 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LDB3O75112 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.17□□□□□ -1.9
LDB3O75112 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
LDB3O75112 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LDB3O75112 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LDB3O75112 AC073343.1-201ENST00000328239 651 ntBASIC3.17□□□□□ -1.9
LDB3O75112 SNORA62.1-201ENST00000364287 154 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU4-48P-201ENST00000365559 182 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU6-38P-201ENST00000384085 107 ntBASIC3.17□□□□□ -1.9
LDB3O75112 MIR7-3-201ENST00000384898 110 ntBASIC3.17□□□□□ -1.9
LDB3O75112 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LDB3O75112 AL359634.1-202ENST00000404721 284 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RN7SKP111-201ENST00000410349 271 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU2-36P-201ENST00000410361 191 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AL356968.1-201ENST00000416622 474 ntBASIC3.17□□□□□ -1.9
LDB3O75112 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.17□□□□□ -1.9
LDB3O75112 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 AP000907.1-201ENST00000428428 510 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC008264.1-201ENST00000447612 367 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AL358232.1-201ENST00000448030 501 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.17□□□□□ -1.9
LDB3O75112 AL162395.1-201ENST00000457882 422 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU6-333P-201ENST00000459117 107 ntBASIC3.17□□□□□ -1.9
LDB3O75112 Y_RNA.632-201ENST00000459189 102 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU6-329P-201ENST00000459618 107 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RPL23AP62-201ENST00000463396 453 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC004801.2-202ENST00000463559 283 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RPL7L1P8-201ENST00000469911 741 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC093663.1-201ENST00000497190 394 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.17□□□□□ -1.9
LDB3O75112 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.17□□□□□ -1.9
LDB3O75112 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU6-390P-201ENST00000516259 103 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RNU6-1038P-201ENST00000516516 104 ntBASIC3.17□□□□□ -1.9
LDB3O75112 RN7SKP60-201ENST00000516985 239 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC107934.2-201ENST00000518653 310 ntBASIC3.17□□□□□ -1.9
LDB3O75112 NDUFB9P3-201ENST00000521269 501 ntBASIC3.17□□□□□ -1.9
LDB3O75112 ERHP1-201ENST00000523006 310 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC087241.2-201ENST00000535801 324 ntBASIC3.17□□□□□ -1.9
LDB3O75112 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.17□□□□□ -1.9
LDB3O75112 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 CTHRC1P1-201ENST00000605383 469 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC103710.3-201ENST00000608157 948 ntBASIC3.17□□□□□ -1.9
LDB3O75112 PART1_1.1-201ENST00000611761 217 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC004696.1-201ENST00000614345 607 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC110801.1-201ENST00000623590 212 ntBASIC3.17□□□□□ -1.9
LDB3O75112 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.17□□□□□ -1.9
LDB3O75112 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.17□□□□□ -1.9
LDB3O75112 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.17□□□□□ -1.9
LDB3O75112 AC004972.1-201ENST00000623934 2209 ntBASIC3.17□□□□□ -1.9
LDB3O75112 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms