Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL355375.2-201ENST00000574825 175 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.01□□□□□ -1.93
LMX1BO60663 CTHRC1P1-201ENST00000605383 469 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AL450472.3-201ENST00000615578 367 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 MIR6130-201ENST00000619419 109 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AC025034.2-201ENST00000623264 286 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.01□□□□□ -1.93
LMX1BO60663 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
LMX1BO60663 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.01□□□□□ -1.93
LMX1BO60663 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3□□□□□ -1.93
LMX1BO60663 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
LMX1BO60663 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3□□□□□ -1.93
LMX1BO60663 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3□□□□□ -1.93
LMX1BO60663 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
LMX1BO60663 RNU1-33P-201ENST00000364249 162 ntBASIC3□□□□□ -1.93
LMX1BO60663 Y_RNA.419-201ENST00000384041 102 ntBASIC3□□□□□ -1.93
LMX1BO60663 RNU6-116P-201ENST00000384042 109 ntBASIC3□□□□□ -1.93
LMX1BO60663 SNORA48.2-201ENST00000390926 124 ntBASIC3□□□□□ -1.93
LMX1BO60663 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3□□□□□ -1.93
LMX1BO60663 MIR1250-201ENST00000408098 113 ntBASIC3□□□□□ -1.93
LMX1BO60663 RNU4-65P-201ENST00000410473 140 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3□□□□□ -1.93
LMX1BO60663 AL354751.2-201ENST00000415471 210 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC005019.1-201ENST00000436455 431 ntBASIC3□□□□□ -1.93
LMX1BO60663 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3□□□□□ -1.93
LMX1BO60663 HMGB1P18-201ENST00000438801 619 ntBASIC3□□□□□ -1.93
LMX1BO60663 MTCO3P45-201ENST00000443036 613 ntBASIC3□□□□□ -1.93
LMX1BO60663 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3□□□□□ -1.93
LMX1BO60663 SNORD97-201ENST00000459187 142 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3□□□□□ -1.93
LMX1BO60663 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3□□□□□ -1.93
LMX1BO60663 AP000873.1-201ENST00000463987 400 ntBASIC3□□□□□ -1.93
LMX1BO60663 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3□□□□□ -1.93
LMX1BO60663 RPL23AP11-201ENST00000475260 469 ntBASIC3□□□□□ -1.93
LMX1BO60663 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3□□□□□ -1.93
LMX1BO60663 AC091885.1-201ENST00000506658 268 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC117522.3-201ENST00000507974 584 ntBASIC3□□□□□ -1.93
LMX1BO60663 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3□□□□□ -1.93
LMX1BO60663 SCARNA15.1-201ENST00000516384 125 ntBASIC3□□□□□ -1.93
LMX1BO60663 RNU6-1038P-201ENST00000516516 104 ntBASIC3□□□□□ -1.93
LMX1BO60663 SNORA70.19-201ENST00000516717 90 ntBASIC3□□□□□ -1.93
LMX1BO60663 RNA5SP503-201ENST00000517047 117 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC126177.3-201ENST00000551839 688 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC026464.5-201ENST00000562497 722 ntBASIC3□□□□□ -1.93
LMX1BO60663 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC008521.1-201ENST00000587471 187 ntBASIC3□□□□□ -1.93
LMX1BO60663 SNHG22-203ENST00000617833 660 ntBASIC3□□□□□ -1.93
LMX1BO60663 AP003355.3-201ENST00000623465 114 ntBASIC3□□□□□ -1.93
LMX1BO60663 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3□□□□□ -1.93
LMX1BO60663 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3□□□□□ -1.93
LMX1BO60663 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LMX1BO60663 MTCO1P9-201ENST00000505577 1534 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.99□□□□□ -1.93
LMX1BO60663 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LMX1BO60663 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LMX1BO60663 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LMX1BO60663 RNU6-179P-201ENST00000363350 107 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 RNA5SP197-201ENST00000363357 119 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 Y_RNA.301-201ENST00000364990 103 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 RNU4-66P-201ENST00000365199 138 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 Y_RNA.378-201ENST00000365652 113 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 RNU6-14P-201ENST00000384630 106 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
LMX1BO60663 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.99□□□□□ -1.93
LMX1BO60663 FAT1P1-201ENST00000406588 507 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 PPP1R11P2-201ENST00000423543 382 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.99□□□□□ -1.93
LMX1BO60663 AL365400.1-201ENST00000431854 640 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
LMX1BO60663 MTCYBP6-201ENST00000441810 138 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.99□□□□□ -1.93
LMX1BO60663 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AC007547.1-201ENST00000462177 490 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 RPL23AP62-201ENST00000463396 453 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 RPS27AP1-201ENST00000475545 471 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 RPL21P93-201ENST00000480465 489 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 HMGN1P13-201ENST00000505795 138 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.99□□□□□ -1.93
LMX1BO60663 SNORA31.22-201ENST00000517204 135 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 AC103783.1-201ENST00000520506 373 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AP001804.3-201ENST00000525146 880 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 AC022690.1-201ENST00000526681 550 ntBASIC2.99□□□□□ -1.93
LMX1BO60663 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
LMX1BO60663 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.99□□□□□ -1.93
LMX1BO60663 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms