Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.82□□□□□ -1.8
PCDHA3Q9Y5H8 Z82243.1-201ENST00000609432 473 ntBASIC3.82□□□□□ -1.8
PCDHA3Q9Y5H8 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHA3Q9Y5H8 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDHA3Q9Y5H8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHA3Q9Y5H8 AC073544.1-201ENST00000600110 1595 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 Y_RNA.126-201ENST00000363382 111 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 RNA5SP515-201ENST00000364570 118 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 RNA5SP283-201ENST00000365604 119 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 Y_RNA.414-201ENST00000384011 101 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 EIF4E2P1-201ENST00000393781 255 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AL356432.1-201ENST00000405809 419 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 RNU2-37P-201ENST00000410695 177 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 NCOR1P3-201ENST00000420479 303 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 HSPE1P1-201ENST00000421494 318 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AL139247.1-201ENST00000422768 325 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 FABP5P15-201ENST00000453566 214 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 RNU7-66P-201ENST00000459469 62 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC084357.1-201ENST00000473404 255 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 SUMO2P6-201ENST00000505273 288 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 HIGD1AP13-201ENST00000509878 289 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC026402.1-201ENST00000513642 170 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 RNA5SP291-201ENST00000517222 105 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC090136.1-201ENST00000520009 240 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC090115.3-201ENST00000553218 849 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 TRAV28-201ENST00000557548 323 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 MIR5692A1-201ENST00000580523 69 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 MIR5187-201ENST00000583479 76 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC092747.3-201ENST00000603769 301 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AL022345.1-201ENST00000607292 135 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC012531.5-201ENST00000611375 151 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 U2.17-201ENST00000611454 95 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 uc_338.5-201ENST00000611839 155 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 RNVU1-4-201ENST00000612985 164 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC022418.1-201ENST00000624118 445 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AC007656.2-201ENST00000624902 4547 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 ZNF285B-201ENST00000561698 1767 ntBASIC3.81□□□□□ -1.8
PCDHA3Q9Y5H8 AL672296.1-201ENST00000427780 2158 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC007785.2-201ENST00000598627 1916 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 Y_RNA.11-201ENST00000362375 109 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 Y_RNA.245-201ENST00000364493 95 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 RNU6-45P-201ENST00000384471 107 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 MIR30B-201ENST00000384850 88 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 RNU6-1197P-201ENST00000391183 107 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 U3.42-201ENST00000408746 214 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AL353678.1-201ENST00000422735 741 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 NDUFA5P4-201ENST00000436704 385 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 HMGB1P12-201ENST00000438594 598 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 HMGN2P7-201ENST00000456186 273 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 DYNLL1P5-201ENST00000467158 270 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 RPS4XP13-201ENST00000483219 789 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC009901.1-201ENST00000506703 541 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AP001804.3-201ENST00000525146 880 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 RPS3AP23-202ENST00000574601 686 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 MIR1273C-201ENST00000578669 77 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 MIR4425-201ENST00000580572 84 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC093227.2-201ENST00000589357 285 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AL354798.1-201ENST00000622505 329 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AL359697.1-201ENST00000624879 587 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AL512643.1-201ENST00000635735 524 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 Z99571.1-201ENST00000636677 394 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AC090740.1-201ENST00000623193 2262 ntBASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHA3Q9Y5H8 AL133383.2-201ENST00000622958 2336 ntBASIC3.79□□□□□ -1.8
PCDHA3Q9Y5H8 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHA3Q9Y5H8 AC068647.1-201ENST00000489539 2265 ntBASIC3.79□□□□□ -1.8
PCDHA3Q9Y5H8 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
PCDHA3Q9Y5H8 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.79□□□□□ -1.8
PCDHA3Q9Y5H8 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PCDHA3Q9Y5H8 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms