Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.53□□□□□ -2
FOXA2Q9Y261 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AL078601.1-201ENST00000444542 271 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AL136380.1-201ENST00000447970 162 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AL441985.1-201ENST00000457727 251 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AC091153.1-201ENST00000466297 402 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AL121769.1-201ENST00000469473 401 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AC109925.1-201ENST00000478069 331 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.53□□□□□ -2
FOXA2Q9Y261 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC108078.2-201ENST00000510750 236 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 RNU6-581P-201ENST00000516214 105 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 BTF3P12-201ENST00000519620 469 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC022616.3-201ENST00000523940 148 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AP002453.2-201ENST00000533503 320 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC091152.3-201ENST00000604227 325 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AC024940.5-201ENST00000622889 474 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AC019226.2-201ENST00000625973 424 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.53□□□□□ -2
FOXA2Q9Y261 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA2Q9Y261 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA2Q9Y261 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.53□□□□□ -2.01
FOXA2Q9Y261 ASNSP3-201ENST00000451989 1306 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 FGF7P2-201ENST00000332473 296 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 U8.3-201ENST00000363321 132 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 SNORA38.1-201ENST00000364172 131 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 RNU6-1280P-201ENST00000365211 107 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 RNU6-395P-201ENST00000365662 106 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AF228730.1-201ENST00000397972 663 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AL357075.1-201ENST00000404107 726 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 RNU4-47P-201ENST00000410876 114 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 RPL19P1-201ENST00000411635 428 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 OR51A5P-201ENST00000415429 942 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC063979.1-201ENST00000415539 377 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC114491.1-201ENST00000416095 246 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 ISCA1P6-201ENST00000427740 390 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 COX6CP2-201ENST00000444980 225 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC098826.2-201ENST00000452011 651 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 BTF3P15-201ENST00000455606 336 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 RAP1BP2-201ENST00000478270 544 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 RN7SKP43-201ENST00000516173 320 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 SNORA31.6-201ENST00000516241 130 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 LINC00933-203ENST00000559812 219 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 MIR5680-201ENST00000577577 84 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC008088.1-201ENST00000580993 280 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AL356280.1-201ENST00000603614 379 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AL139286.2-201ENST00000606838 396 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AP001506.1-201ENST00000615444 211 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 CU459211.1-201ENST00000635667 749 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 AC080128.1-201ENST00000474389 1917 ntBASIC2.52□□□□□ -2.01
FOXA2Q9Y261 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA2Q9Y261 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 MTND5P30-201ENST00000452896 1731 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 OR5J1P-201ENST00000313544 939 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RNU6-898P-201ENST00000365627 104 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RNU1-109P-201ENST00000383960 147 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RNA5SP274-201ENST00000410484 108 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 NDUFB4P5-201ENST00000415445 361 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC009518.2-201ENST00000418056 731 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC244505.4-201ENST00000434905 287 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RPL36AP6-201ENST00000435770 321 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC073614.1-201ENST00000438690 650 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RPL21P2-201ENST00000440049 481 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 SSXP5-201ENST00000443473 287 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC003071.1-201ENST00000451219 789 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RN7SL283P-201ENST00000489055 303 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 RNA5SP385-201ENST00000515947 110 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 OR5BN1P-201ENST00000532955 829 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC007834.2-201ENST00000536310 343 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 CYCSP39-201ENST00000565821 309 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms