Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RPL23AP55-201ENST00000498163 452 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC008628.2-201ENST00000502605 298 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 MTCO3P9-201ENST00000506989 781 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RBBP4P6-201ENST00000508098 202 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC046134.1-201ENST00000514454 666 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU6-1073P-201ENST00000517182 106 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AL137161.1-201ENST00000532231 390 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 OR5B10P-201ENST00000532869 642 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC023050.3-201ENST00000541142 333 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 BNIP3P6-201ENST00000549284 499 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AP001330.4-201ENST00000604350 154 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNVU1-4-201ENST00000612985 164 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC104985.2-201ENST00000620598 500 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 MIR7153-201ENST00000637758 57 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.167-201ENST00000363735 109 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 RNA5SP424-201ENST00000390988 115 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 MTHFD2P2-201ENST00000407725 247 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 OR6C66P-201ENST00000414917 930 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AL513185.2-201ENST00000425543 193 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 ZNF863P-201ENST00000426746 417 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 ATP5JP1-201ENST00000431631 322 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 VDAC1P3-201ENST00000434069 851 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 SNRPFP3-201ENST00000457792 225 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 RPS29P2-201ENST00000479278 136 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC026784.1-201ENST00000507986 352 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC114786.4-201ENST00000508771 728 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC025465.4-201ENST00000513422 638 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 KLKP1-201ENST00000595979 403 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC005261.5-201ENST00000596280 355 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 DPPA3P3-201ENST00000603842 430 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 SNORA62.6-201ENST00000606322 83 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 AC090132.2-201ENST00000615881 347 ntBASIC3.55□□□□□ -1.84
VPS4AQ9UN37 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VPS4AQ9UN37 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.166-201ENST00000363730 102 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 MIR184-201ENST00000384962 84 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL391417.1-201ENST00000404100 426 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 BX323014.1-201ENST00000412876 237 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AC007390.1-201ENST00000415722 356 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL645937.1-202ENST00000421799 937 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 MTCO3P46-201ENST00000425787 232 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 RPL7L1P10-201ENST00000427790 463 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 CCDC34P1-201ENST00000507441 517 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 RNU6-123P-201ENST00000516163 102 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 SNORA70.16-201ENST00000516390 95 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.689-201ENST00000516589 107 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL118558.2-201ENST00000556294 238 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 FGF7P1-201ENST00000582820 288 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AL117336.2-201ENST00000602435 335 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AC021646.1-201ENST00000605469 484 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 AC090617.10-201ENST00000624308 134 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms