Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MTND4LP3-201ENST00000468320 276 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC003982.1-202ENST00000469928 248 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC010424.1-201ENST00000506336 297 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 NDUFB4P2-201ENST00000509515 391 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC022447.1-201ENST00000515358 464 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP471-201ENST00000516971 106 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RNU6-1220P-201ENST00000517126 108 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RPS3AP4-201ENST00000555161 764 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 GTF3AP2-201ENST00000557014 266 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RSL24D1P11-201ENST00000591045 491 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC136601.2-201ENST00000604356 474 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AL627309.6-201ENST00000606857 840 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC097065.2-201ENST00000608159 533 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AP003399.1-201ENST00000637534 361 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AL390237.1-201ENST00000404226 1415 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 RNU1-112P-201ENST00000364401 164 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 SMIM11P1-201ENST00000369586 178 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 SNORD21-201ENST00000383953 95 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 RNU6-217P-201ENST00000384164 104 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 RNU6-39P-201ENST00000384344 107 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 Y_RNA.553-201ENST00000384670 102 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AL138827.1-201ENST00000402666 306 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 BTF3L4P3-201ENST00000418879 476 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC099548.1-201ENST00000421443 426 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AL139281.1-201ENST00000422120 335 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 HMGB3P12-201ENST00000438745 556 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC013267.1-201ENST00000458227 267 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 RNU6-956P-201ENST00000458868 103 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP291-201ENST00000517222 105 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC022616.3-201ENST00000523940 148 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC011979.2-201ENST00000527568 352 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC138761.3-201ENST00000579993 334 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC006504.3-201ENST00000586818 523 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC007363.1-201ENST00000604736 620 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC090578.1-201ENST00000604955 591 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 ATP1B3P1-201ENST00000605365 821 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC004908.3-201ENST00000610248 625 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 PISRT1-201ENST00000626175 531 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AC110994.2-201ENST00000635481 492 ntBASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.01□□□□□ -1.93
CPSF3Q9UKF6 AL365361.1-201ENST00000566942 3481 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3□□□□□ -1.93
CPSF3Q9UKF6 MIR26A1-201ENST00000362205 77 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 SNORD56.2-201ENST00000363242 71 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RNU6-188P-201ENST00000364207 107 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 SNORA75-201ENST00000384158 137 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RNU6-348P-201ENST00000384386 107 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RNA5SP354-201ENST00000391247 136 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL360182.1-201ENST00000397433 468 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RNU6-193P-201ENST00000410977 107 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 RPL7P10-201ENST00000417407 739 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 MTND4P32-201ENST00000437189 1237 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL590639.1-201ENST00000456484 337 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RN7SL432P-201ENST00000484057 298 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL160314.1-201ENST00000490836 438 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RPS27P26-201ENST00000494583 239 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RNU2-10P-201ENST00000516375 211 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 SNORA18.6-201ENST00000516792 115 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 RNU6-1092P-201ENST00000516955 87 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 ATP5F1P5-201ENST00000526403 760 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 AC068135.2-201ENST00000569293 1028 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 MIR3167-201ENST00000579623 85 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 ZNF861P-201ENST00000588126 639 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AC040904.1-201ENST00000590850 223 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.6-201ENST00000603753 252 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.11-201ENST00000604059 253 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AC008162.1-201ENST00000604718 254 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.1-201ENST00000604752 252 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.5-201ENST00000605253 252 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.12-201ENST00000605291 253 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.8-201ENST00000605353 252 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL670379.7-201ENST00000605823 252 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 AC034102.8-201ENST00000615146 484 ntBASIC3□□□□□ -1.93
CPSF3Q9UKF6 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3□□□□□ -1.93
CPSF3Q9UKF6 AL589994.2-201ENST00000621124 579 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 232.4 ms