Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SCARNA15-201ENST00000607520 4325 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC092681.1-201ENST00000297369 291 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 RNU6-140P-201ENST00000384566 108 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 MTHFD2P2-201ENST00000407725 247 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 RNU4-30P-201ENST00000410245 143 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC079809.1-201ENST00000415468 276 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC092047.1-201ENST00000424997 240 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 RPS29P10-201ENST00000439197 166 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC243964.1-201ENST00000441814 261 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.638-201ENST00000459374 113 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AF186996.7-201ENST00000492781 209 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 SNORD116-28-201ENST00000516123 91 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 PARP1P2-201ENST00000556806 195 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 ATP5J2P6-201ENST00000565203 266 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC018529.3-201ENST00000624212 2254 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.170-201ENST00000363746 110 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 RNA5SP90-201ENST00000364801 99 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.286-201ENST00000364813 102 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.319-201ENST00000365138 92 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 RNU6-1035P-201ENST00000384477 107 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 TOMM22P1-201ENST00000418578 312 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 LINC02210-201ENST00000444561 288 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC083899.1-201ENST00000454465 3819 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 SNORD125-201ENST00000459538 96 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 TRAPPC2P7-201ENST00000509650 231 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 COX6B1P5-201ENST00000509843 249 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC027288.2-201ENST00000553028 243 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 AC021753.1-201ENST00000635724 168 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 MARK2P15-201ENST00000432204 2186 ntBASIC5.38□□□□□ -1.55
LIMD1Q9UGP4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 MIR410-201ENST00000362222 80 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 Y_RNA.240-201ENST00000364469 95 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RNU6-47P-201ENST00000383866 107 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 SNORA29-201ENST00000384183 140 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RNA5SP187-201ENST00000384400 119 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RNU6-1081P-201ENST00000384537 107 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 GPS2P1-201ENST00000411761 986 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AURKAPS2-201ENST00000454983 333 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AC091021.1-201ENST00000468051 388 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RN7SL188P-201ENST00000469842 285 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AC074198.2-201ENST00000508153 258 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 TOMM20P2-201ENST00000540082 421 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 H3F3AP1-201ENST00000559984 334 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 AC004832.4-201ENST00000608952 331 ntBASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
LIMD1Q9UGP4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIMD1Q9UGP4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms