Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RNU6-711P-201ENST00000517255 106 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AP003072.2-201ENST00000527756 676 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AP001646.1-201ENST00000527936 915 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AC068587.5-201ENST00000528506 175 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AC104383.1-201ENST00000530297 370 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 HMGB1P6-201ENST00000569046 646 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AC007621.1-201ENST00000604544 437 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AP001330.5-201ENST00000607176 411 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 MIR4275-201ENST00000636486 87 ntBASIC3.21□□□□□ -1.9
PCDH9Q9HC56 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDH9Q9HC56 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 OR4G2P-202ENST00000641004 1759 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 RNU6-1322P-201ENST00000364309 107 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 Y_RNA.295-201ENST00000364918 102 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 SNORA36C-201ENST00000384289 132 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 RNU6-1158P-201ENST00000391167 107 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AL591034.1-201ENST00000407447 340 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 MIR1277-201ENST00000408536 78 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 RPS29P15-201ENST00000458329 171 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 RN7SL863P-201ENST00000462370 296 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 RN7SL432P-201ENST00000484057 298 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 RN7SKP43-201ENST00000516173 320 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 SNORA31.8-201ENST00000516327 108 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 SNORD59.2-201ENST00000516873 68 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC109635.3-201ENST00000529536 185 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 OR5AL2P-201ENST00000532185 920 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 SNORA59B-202ENST00000578183 701 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC008752.3-201ENST00000588113 712 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC093648.1-201ENST00000623546 606 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 MIR1321-201ENST00000637766 79 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 MTND5P19-201ENST00000424872 1794 ntBASIC3.2□□□□□ -1.9
PCDH9Q9HC56 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.2□□□□□ -1.9
PCDH9Q9HC56 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 Y_RNA.38-201ENST00000362617 102 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 Y_RNA.573-201ENST00000384763 105 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 RN7SKP140-201ENST00000411196 284 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL353678.1-201ENST00000422735 741 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 FGF7P6-202ENST00000451282 293 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 FABP5P13-201ENST00000452144 328 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 RNU7-63P-201ENST00000459054 62 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC092185.1-201ENST00000491371 97 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL512310.1-201ENST00000548639 172 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 TRAV37-201ENST00000553906 342 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL157687.1-201ENST00000554853 619 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL355836.1-201ENST00000555951 870 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC006504.3-201ENST00000586818 523 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AP001029.3-201ENST00000588063 596 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.6-201ENST00000603753 252 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.11-201ENST00000604059 253 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC008162.1-201ENST00000604718 254 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.1-201ENST00000604752 252 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC012468.1-201ENST00000604888 430 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC007179.3-201ENST00000604976 235 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC106900.2-201ENST00000604994 317 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.5-201ENST00000605253 252 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.12-201ENST00000605291 253 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.8-201ENST00000605353 252 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL670379.7-201ENST00000605823 252 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC004832.5-201ENST00000608677 401 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDH9Q9HC56 WT1-AS_8.1-201ENST00000615200 275 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC068831.7-201ENST00000616954 363 ntBASIC3.19□□□□□ -1.9
PCDH9Q9HC56 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms