Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SNORD26-201ENST00000384147 75 ntBASIC0.36□□□□□ -2.35
VPS13AQ96RL7 MIR676-201ENST00000390702 67 ntBASIC0.36□□□□□ -2.35
VPS13AQ96RL7 AL133384.1-201ENST00000412744 351 ntBASIC0.36□□□□□ -2.35
VPS13AQ96RL7 AC114737.2-201ENST00000421583 173 ntBASIC0.36□□□□□ -2.35
VPS13AQ96RL7 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC0.36□□□□□ -2.35
VPS13AQ96RL7 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
VPS13AQ96RL7 RNU6-1180P-201ENST00000364935 107 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 RNU6-19P-201ENST00000384718 107 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
VPS13AQ96RL7 CIR1P3-201ENST00000405137 479 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 AL356776.1-201ENST00000406574 447 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 SNORD59.2-201ENST00000516873 68 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 AC007834.2-201ENST00000536310 343 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.35□□□□□ -2.35
VPS13AQ96RL7 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
VPS13AQ96RL7 HMGB3P10-201ENST00000434734 572 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 Y_RNA.644-201ENST00000459006 113 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 AC021146.2-201ENST00000504736 556 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.35□□□□□ -2.35
VPS13AQ96RL7 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC0.35□□□□□ -2.35
VPS13AQ96RL7 TMEM167AP1-201ENST00000423409 219 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 AC103710.4-201ENST00000609301 899 ntBASIC0.35□□□□□ -2.35
VPS13AQ96RL7 AC099654.7-201ENST00000635788 2127 ntBASIC0.34□□□□□ -2.35
VPS13AQ96RL7 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC0.34□□□□□ -2.35
VPS13AQ96RL7 Y_RNA.453-201ENST00000384223 109 ntBASIC0.34□□□□□ -2.35
VPS13AQ96RL7 RPS29P8-201ENST00000445109 171 ntBASIC0.34□□□□□ -2.35
VPS13AQ96RL7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.34□□□□□ -2.35
VPS13AQ96RL7 AL442644.1-201ENST00000454390 3105 ntBASIC0.34□□□□□ -2.36
VPS13AQ96RL7 SNORA7.2-201ENST00000364446 145 ntBASIC0.34□□□□□ -2.36
VPS13AQ96RL7 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.34□□□□□ -2.36
VPS13AQ96RL7 HMGB1P46-201ENST00000520062 610 ntBASIC0.34□□□□□ -2.36
VPS13AQ96RL7 AL121890.5-201ENST00000620848 304 ntBASIC0.34□□□□□ -2.36
VPS13AQ96RL7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC073055.1-201ENST00000456901 1621 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 HSBP1P2-201ENST00000299671 229 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RNU6-112P-201ENST00000363599 104 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RNU6-939P-201ENST00000384634 107 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC096649.2-201ENST00000416186 393 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RPL30P14-201ENST00000482744 348 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC106800.4-201ENST00000614905 153 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 NDUFB4P7-201ENST00000423198 363 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 SNORA62.5-201ENST00000516634 120 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AL590705.4-201ENST00000532209 134 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 SYF2P1-201ENST00000550658 413 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RNY4P24-201ENST00000362735 96 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RNU1-96P-201ENST00000364163 162 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RNU6-923P-201ENST00000364753 107 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AP002784.2-201ENST00000397300 549 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 RPL23AP95-201ENST00000426806 265 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 MTND5P8-201ENST00000449817 1083 ntBASIC0.33□□□□□ -2.36
VPS13AQ96RL7 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC0.33□□□□□ -2.36
VPS13AQ96RL7 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
VPS13AQ96RL7 NAP1L4P3-201ENST00000432820 1147 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 DYNLT3P2-201ENST00000442517 295 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 PRPS1P1-201ENST00000445305 876 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
VPS13AQ96RL7 RNA5SP67-201ENST00000516422 131 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS13AQ96RL7 AC097372.5-201ENST00000623665 376 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.32□□□□□ -2.36
VPS13AQ96RL7 AC100821.1-201ENST00000523153 2479 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 MIR604-201ENST00000384880 94 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 RPS27P22-201ENST00000478056 241 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 Y_RNA.654-201ENST00000497848 106 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS13AQ96RL7 AL391516.1-201ENST00000554380 2449 ntBASIC0.32□□□□□ -2.36
VPS13AQ96RL7 AL031577.2-201ENST00000404133 280 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AC139453.3-201ENST00000493276 369 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 RNU6-322P-201ENST00000516010 103 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.31□□□□□ -2.36
VPS13AQ96RL7 RNU6-733P-201ENST00000410759 104 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AC010099.3-201ENST00000423896 409 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC0.31□□□□□ -2.36
VPS13AQ96RL7 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.31□□□□□ -2.36
VPS13AQ96RL7 MTND4P6-201ENST00000438297 472 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AP001180.6-201ENST00000584918 159 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AC016590.3-201ENST00000611171 753 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 Pinc.1-201ENST00000616452 154 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AP000776.1-201ENST00000530032 1663 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AC011155.1-201ENST00000316512 456 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
VPS13AQ96RL7 XKRYP1-201ENST00000423438 492 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 XKRYP2-201ENST00000432915 492 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.31□□□□□ -2.36
VPS13AQ96RL7 OR2A41P-201ENST00000473586 105 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.31□□□□□ -2.36
VPS13AQ96RL7 AL138726.1-201ENST00000614873 333 ntBASIC0.31□□□□□ -2.36
VPS13AQ96RL7 RPS3AP36-201ENST00000398190 775 ntBASIC0.3□□□□□ -2.36
VPS13AQ96RL7 RN7SKP142-201ENST00000411236 328 ntBASIC0.3□□□□□ -2.36
VPS13AQ96RL7 AC090425.2-201ENST00000608818 501 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms