Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 RNY3P13-201ENST00000365542 102 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 RPS24P7-201ENST00000416921 246 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AL606662.1-201ENST00000445763 553 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AL606517.1-201ENST00000446914 387 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 HMGN2P10-201ENST00000448085 265 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC027673.1-201ENST00000456245 405 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC072039.1-201ENST00000477611 581 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC008716.1-201ENST00000511084 513 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 RNA5SP320-201ENST00000516263 124 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 RNU6-703P-201ENST00000516946 107 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AP001646.1-201ENST00000527936 915 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AL391813.1-201ENST00000603098 260 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AP000811.1-201ENST00000603803 651 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AL355598.1-201ENST00000604169 202 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC018714.1-201ENST00000605028 208 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC108747.1-201ENST00000609508 535 ntBASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC43Q96MW1 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 MTND4P27-201ENST00000450813 1354 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 Y_RNA.97-201ENST00000363094 102 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 RNU6-288P-201ENST00000363690 104 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 RNU6-1083P-201ENST00000384022 107 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 ANAPC10P1-201ENST00000395991 556 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AL162578.1-201ENST00000406202 378 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AL096701.2-201ENST00000416920 238 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 RPL22P18-201ENST00000417197 377 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 MTND4P25-201ENST00000441039 533 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 GDI2P2-201ENST00000445131 608 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC128713.1-201ENST00000471495 306 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 RNU6-1003P-201ENST00000517099 105 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC43Q96MW1 MIR3616-201ENST00000584070 92 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 MIR4658-201ENST00000584344 65 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AL050303.3-201ENST00000613704 284 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC009159.1-201ENST00000618386 642 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC068787.1-201ENST00000623908 691 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 AC007490.1-201ENST00000624321 703 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 IGHVIII-44-202ENST00000636235 289 ntBASIC2.79□□□□□ -1.96
CCDC43Q96MW1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 NACAP2-201ENST00000318548 624 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 RNA5SP181-201ENST00000410246 98 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 MTCO3P30-201ENST00000426425 670 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AL592045.1-201ENST00000429867 352 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 RPL37P21-201ENST00000435890 276 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 MTATP6P7-201ENST00000453315 681 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 RNU7-26P-201ENST00000458980 63 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 RBM43P1-201ENST00000476891 1081 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 GZMAP1-201ENST00000503054 631 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 NDUFB4P2-201ENST00000509515 391 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 RPL7P20-201ENST00000520308 745 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC009097.3-201ENST00000563557 1018 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC135628.1-201ENST00000568867 534 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 MIR3167-201ENST00000579623 85 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC060766.3-201ENST00000591442 263 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC073544.2-201ENST00000601155 540 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AP001981.2-201ENST00000603241 418 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC007363.1-201ENST00000604736 620 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AC010329.5-201ENST00000623497 2174 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
CCDC43Q96MW1 AL137003.2-201ENST00000606924 2538 ntBASIC2.78□□□□□ -1.96
CCDC43Q96MW1 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 MIR6073-201ENST00000352083 89 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 RNU4-28P-201ENST00000364739 141 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 MIR218-1-201ENST00000384999 110 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms