Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DEFB131D-201ENST00000526803 184 ntBASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AC007375.1-201ENST00000554513 578 ntBASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 MIR3683-201ENST00000580847 82 ntBASIC1.74□□□□□ -2.13
LMX1AQ8TE12 BNIP3P26-201ENST00000600827 554 ntBASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AL603758.1-201ENST00000618654 241 ntBASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 AC012640.5-201ENST00000623897 319 ntBASIC1.74□□□□□ -2.13
LMX1AQ8TE12 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.74□□□□□ -2.13
LMX1AQ8TE12 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 RNU6-457P-201ENST00000363999 107 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 RNU6-560P-201ENST00000364007 108 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 RNA5SP138-201ENST00000365098 114 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AL590084.1-201ENST00000407885 387 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 Y_RNA.595-201ENST00000410403 105 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 RPL17P12-201ENST00000413391 526 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 RPL23AP39-201ENST00000415533 405 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 TIMM9P2-201ENST00000419324 266 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 MICF-203ENST00000432679 129 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AL645568.3-201ENST00000433683 316 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 MTCO2P25-201ENST00000447065 681 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 ATG12P2-201ENST00000456830 416 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC022447.3-201ENST00000506865 495 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC022447.1-201ENST00000515358 464 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 LRRC6P1-201ENST00000532188 885 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC023043.2-201ENST00000589678 1026 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 APOOP1-201ENST00000604695 592 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 MIR502-201ENST00000606349 86 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 OR10AB1P-201ENST00000609613 938 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 LINC02211-204ENST00000642024 1070 ntBASIC1.73□□□□□ -2.13
LMX1AQ8TE12 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.73□□□□□ -2.13
LMX1AQ8TE12 AL390862.1-201ENST00000635467 1469 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AL109755.1-201ENST00000401791 649 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 MTND1P21-201ENST00000412991 285 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 USP9YP11-201ENST00000427537 717 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 USP12PX-201ENST00000432383 1057 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC002381.1-201ENST00000447049 280 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 ANKRD26P4-201ENST00000455755 950 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 snoU13.8-201ENST00000458890 104 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 RPS20P20-201ENST00000460498 340 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AL049874.1-201ENST00000489560 388 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 RNU6-1053P-201ENST00000515930 101 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 SCARNA17.1-201ENST00000516211 143 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 RNY4P37-201ENST00000516225 96 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 SCARNA17.2-201ENST00000516334 143 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC010376.1-201ENST00000522101 334 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 MIR4498-201ENST00000577599 66 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 KC877982.1-201ENST00000602313 470 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC008498.1-201ENST00000613012 531 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 SCARNA17.4-201ENST00000614296 143 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC008443.7-201ENST00000622195 246 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.72□□□□□ -2.13
LMX1AQ8TE12 MTND1P37-201ENST00000636562 264 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 DDX10P1-201ENST00000448545 1933 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 MTND4P27-201ENST00000450813 1354 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 DDX43P2-201ENST00000604753 1354 ntBASIC1.72□□□□□ -2.13
LMX1AQ8TE12 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LMX1AQ8TE12 RNU6-637P-201ENST00000384050 107 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 RNU6-1000P-201ENST00000391066 106 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.71□□□□□ -2.14
LMX1AQ8TE12 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.71□□□□□ -2.14
LMX1AQ8TE12 HMGN2P38-201ENST00000423806 265 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 BX119904.4-201ENST00000424402 301 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 AC008850.1-201ENST00000427546 362 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 ISCA1P6-201ENST00000427740 390 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.71□□□□□ -2.14
LMX1AQ8TE12 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.71□□□□□ -2.14
LMX1AQ8TE12 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.71□□□□□ -2.14
LMX1AQ8TE12 RPL23AP76-201ENST00000441860 458 ntBASIC1.71□□□□□ -2.14
LMX1AQ8TE12 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms