Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MTCO3P30-201ENST00000426425 670 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 ISCA1P1-201ENST00000426679 387 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 TIMM9P1-201ENST00000436122 256 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 MTND4P25-201ENST00000441039 533 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 RPL23AP11-201ENST00000475260 469 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 GTF2IP9-201ENST00000502460 301 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC034244.1-201ENST00000507687 207 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 SNORD19.2-201ENST00000516978 73 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC021739.1-201ENST00000559631 174 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC023824.2-201ENST00000566185 400 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL356432.3-201ENST00000568952 465 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC009163.5-201ENST00000575421 637 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 MIR4635-201ENST00000583759 79 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL158827.2-201ENST00000602494 330 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL391813.1-201ENST00000603098 260 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AC021755.4-201ENST00000616620 456 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL078595.3-201ENST00000623815 1166 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL691447.3-201ENST00000635020 330 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 SNORD62.1-201ENST00000362541 86 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC003685.2-201ENST00000422795 395 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 SUMO1P4-201ENST00000429430 302 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AL161651.1-201ENST00000440882 223 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 NEFMP1-201ENST00000443423 1006 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 RPL39P40-201ENST00000445481 146 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 HMGN2P10-201ENST00000448085 265 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 MTATP6P7-201ENST00000453315 681 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 snoU13.15-201ENST00000459407 104 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC026801.1-201ENST00000497178 464 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 TPT1P8-201ENST00000510120 555 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 SNORA31.3-201ENST00000516029 96 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 RNU6-143P-201ENST00000516942 93 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC023050.2-201ENST00000544968 387 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 MIR4307-201ENST00000582802 84 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC023043.3-201ENST00000593113 385 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 BNIP3P39-201ENST00000601077 554 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 KC877982.1-201ENST00000602313 470 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 AL136370.1-201ENST00000608166 691 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 TUSC7.1-201ENST00000610969 165 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 HMGB1P24-202ENST00000615653 685 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 MIR7157-201ENST00000635801 60 ntBASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.64□□□□□ -1.99
HDDC3Q8N4P3 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL161431.1-201ENST00000618966 4205 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 MIR218-1-201ENST00000384999 110 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 U8.14-201ENST00000390843 143 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL590004.2-201ENST00000404787 371 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 SNORA3.2-201ENST00000408221 125 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AC078974.1-201ENST00000411597 223 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL135786.1-201ENST00000415892 214 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 RPLP0P7-201ENST00000416050 667 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 MTND1P20-201ENST00000430341 950 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 COX6CP12-201ENST00000446748 202 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 OR6C5P-201ENST00000452388 923 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 GSTA11P-201ENST00000452866 669 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AC233279.1-201ENST00000455300 423 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AP000852.1-201ENST00000472460 573 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 SNORA31.6-201ENST00000516241 130 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AC006199.1-201ENST00000548728 219 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AL121821.2-201ENST00000556081 394 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 MTCO3P13-201ENST00000577757 781 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 AC073544.2-201ENST00000601155 540 ntBASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HDDC3Q8N4P3 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms