Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 MIR3158-1-201ENST00000583596 81 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 FAM60CP-201ENST00000591086 664 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 SRGNP1-201ENST00000603392 451 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AL391646.1-201ENST00000603860 190 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC123912.5-201ENST00000605470 343 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC084824.5-201ENST00000612009 413 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 uc_338.12-201ENST00000616344 181 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 FTO-223ENST00000640179 210 ntTSL 5 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 MTND4P16-201ENST00000466108 1367 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 GNG5P1-201ENST00000255500 204 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 SNORA4.1-201ENST00000364263 144 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 MIR141-201ENST00000384975 95 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AL117342.1-201ENST00000404861 406 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 RPS3AP25-201ENST00000411660 793 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 UBE2V1P9-201ENST00000414760 368 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC008850.1-201ENST00000427546 362 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 MTCO1P45-201ENST00000431457 267 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 RPL7P34-201ENST00000433316 712 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 MTCO1P53-201ENST00000441633 699 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AL161788.1-201ENST00000441805 169 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 MTCO1P44-201ENST00000441935 243 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 RPL31P3-201ENST00000458430 332 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 RPS27P22-201ENST00000478056 241 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC096576.1-201ENST00000489014 359 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 RNU6-202P-201ENST00000515998 96 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 CA1-215ENST00000522389 551 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 CYB5AP5-201ENST00000549779 389 ntBASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.41□□□□□ -2.34
LINC00643Q86TS7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 SNORA5B-201ENST00000363786 132 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 RNU6ATAC37P-201ENST00000408328 131 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 MORN2-202ENST00000409077 465 ntTSL 5 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 BTF3P8-201ENST00000414577 526 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AL451062.2-201ENST00000427515 271 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 RAP1BP2-201ENST00000478270 544 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 RNU6-488P-201ENST00000515918 99 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 SNORA48.9-201ENST00000516419 162 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 SNORA31.22-201ENST00000517204 135 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC067805.1-201ENST00000559344 470 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC097468.3-201ENST00000607956 456 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC009318.2-201ENST00000610917 651 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC135507.2-201ENST00000612443 309 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AL365204.3-201ENST00000612448 685 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 MIR6845-201ENST00000613182 61 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC099654.5-201ENST00000636479 350 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 AC083865.1-201ENST00000636634 831 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 ZNF663P-202ENST00000641770 1131 ntBASIC0.4□□□□□ -2.35
LINC00643Q86TS7 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
LINC00643Q86TS7 SNORD1A-201ENST00000364968 72 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 RNU6-441P-201ENST00000384545 106 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 MIR597-201ENST00000384968 97 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 MIR532-201ENST00000385025 91 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 MIR95-201ENST00000385072 81 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 DUXAP8-207ENST00000456786 622 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC006512.1-201ENST00000468816 291 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC068587.2-201ENST00000478386 781 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 SMURF2P1-201ENST00000514992 481 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 MIR4421-201ENST00000578133 69 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AP001004.1-201ENST00000582468 324 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AL022067.1-201ENST00000602426 454 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AL161729.4-201ENST00000604650 476 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC006133.1-201ENST00000617106 264 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC007490.1-201ENST00000624321 703 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 AC006386.2-201ENST00000624491 75 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms