Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC002044.1-201ENST00000606707 158 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AL138880.2-201ENST00000616214 239 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC009248.2-201ENST00000619826 254 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC092794.2-201ENST00000620933 563 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SF3A1Q15459 PLCE1P1-201ENST00000622094 305 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SF3A1Q15459 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SF3A1Q15459 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SF3A1Q15459 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 RNU6-266P-201ENST00000364225 107 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 RNA5SP130-201ENST00000364431 114 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 MIR10A-201ENST00000385043 110 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 SNORA48.7-201ENST00000391302 135 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 USP9YP20-201ENST00000419224 558 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.53□□□□□ -1.68
SF3A1Q15459 AC083863.1-201ENST00000438811 231 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.53□□□□□ -1.68
SF3A1Q15459 RNU1-86P-201ENST00000516108 154 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 RNU1-107P-201ENST00000516617 154 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 MIR2114-201ENST00000516645 80 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.53□□□□□ -1.68
SF3A1Q15459 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.53□□□□□ -1.68
SF3A1Q15459 PSMA3P-201ENST00000555485 635 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 MTCO3P23-201ENST00000561363 289 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AL592436.1-201ENST00000605135 558 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AL121757.2-201ENST00000611223 313 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 AC063943.3-201ENST00000615562 356 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 ZYXP1-201ENST00000617638 118 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.53□□□□□ -1.68
SF3A1Q15459 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SF3A1Q15459 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SF3A1Q15459 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.53□□□□□ -1.68
SF3A1Q15459 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.53□□□□□ -1.68
SF3A1Q15459 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SF3A1Q15459 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
SF3A1Q15459 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
SF3A1Q15459 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SF3A1Q15459 RNU6-1252P-201ENST00000363054 104 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 RNU1-64P-201ENST00000365443 163 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 RNA5SP252-201ENST00000391131 119 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 RNU6-607P-201ENST00000411283 108 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.52□□□□□ -1.69
SF3A1Q15459 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.52□□□□□ -1.69
SF3A1Q15459 SKA2P1-201ENST00000425592 390 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 SETP5-201ENST00000437270 562 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.52□□□□□ -1.69
SF3A1Q15459 AL500522.2-201ENST00000448562 343 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 AC034236.1-201ENST00000469891 373 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.52□□□□□ -1.69
SF3A1Q15459 AC079140.5-201ENST00000507882 310 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 FAM206BP-201ENST00000510179 541 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 SNORA31.1-201ENST00000515993 133 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 SNORA14.1-201ENST00000516113 141 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 SNORA31.5-201ENST00000516190 133 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 RNU6-711P-201ENST00000517255 106 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 MRPL49P2-201ENST00000521066 465 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 AC091516.1-201ENST00000549191 703 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 AL391261.3-201ENST00000557194 520 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 AL360157.1-201ENST00000565962 87 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.52□□□□□ -1.69
SF3A1Q15459 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.52□□□□□ -1.69
SF3A1Q15459 AL357078.3-201ENST00000607528 618 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 MIR486-1-201ENST00000612171 68 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 U6.98-201ENST00000637157 84 ntBASIC4.52□□□□□ -1.69
SF3A1Q15459 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
SF3A1Q15459 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SF3A1Q15459 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.51□□□□□ -1.69
SF3A1Q15459 AC121333.1-201ENST00000567488 2709 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 Y_RNA.167-201ENST00000363735 109 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 SNORD14B-201ENST00000364533 90 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RNU5E-4P-201ENST00000364931 120 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RNU6-198P-201ENST00000384258 104 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RNU6-166P-201ENST00000384371 107 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RNU1-89P-201ENST00000384592 164 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RNU6-510P-201ENST00000391239 108 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RPS26P8-201ENST00000393490 348 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AL022722.2-201ENST00000402519 180 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AL138878.1-201ENST00000405131 347 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RNU6-1148P-201ENST00000410992 104 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AL592148.1-201ENST00000413568 445 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AC007390.1-201ENST00000415722 356 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.51□□□□□ -1.69
SF3A1Q15459 AL627311.1-201ENST00000431514 115 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms