Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC005300.1-201ENST00000428401 373 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 RPL21P40-201ENST00000428586 483 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.4□□□□□ -1.87
HDAC4P56524 RNU6-718P-201ENST00000516166 105 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 RNU6-410P-201ENST00000517006 107 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 RN7SKP57-201ENST00000517248 293 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 SNORA31.26-201ENST00000517250 137 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 NRON-201ENST00000517270 370 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC011611.1-201ENST00000552179 197 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.4□□□□□ -1.87
HDAC4P56524 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.4□□□□□ -1.87
HDAC4P56524 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC073657.2-201ENST00000605661 303 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.4□□□□□ -1.87
HDAC4P56524 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HDAC4P56524 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HDAC4P56524 RNU6-1097P-201ENST00000363586 107 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 Y_RNA.367-201ENST00000365544 101 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 SMIM11P1-201ENST00000369586 178 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 NDUFS5P1-201ENST00000405668 289 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AL513331.1-201ENST00000411908 397 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 NDUFB4P7-201ENST00000423198 363 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.39□□□□□ -1.87
HDAC4P56524 ISCA1P1-201ENST00000426679 387 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 MED13P1-201ENST00000428342 171 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.39□□□□□ -1.87
HDAC4P56524 MTATP6P16-201ENST00000434543 526 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 CST9LP2-201ENST00000437612 320 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 HMGB3P12-201ENST00000438745 556 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC079781.2-201ENST00000446424 169 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 SNORD27.1-201ENST00000516319 72 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 RNU6-1256P-201ENST00000516539 103 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 RNU6-1092P-201ENST00000516955 87 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC104027.1-201ENST00000521887 300 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC024619.4-201ENST00000580924 316 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AC098848.2-201ENST00000588023 330 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.39□□□□□ -1.87
HDAC4P56524 Z84480.1-201ENST00000605131 311 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AP001330.5-201ENST00000607176 411 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AP001596.2-201ENST00000608410 312 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AC093648.1-201ENST00000623546 606 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 AC073476.4-201ENST00000628409 72 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 TPTE2P4-201ENST00000258589 1605 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HDAC4P56524 AC004972.1-201ENST00000623934 2209 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 ELF2P3-201ENST00000445099 1506 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.39□□□□□ -1.87
HDAC4P56524 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.39□□□□□ -1.87
HDAC4P56524 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HDAC4P56524 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.38□□□□□ -1.87
HDAC4P56524 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HDAC4P56524 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
HDAC4P56524 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.38□□□□□ -1.87
HDAC4P56524 MIR148B-201ENST00000362252 99 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 RNU6-1090P-201ENST00000364065 94 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 Y_RNA.256-201ENST00000364594 104 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 RNU6-14P-201ENST00000384630 106 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HDAC4P56524 AL139397.2-201ENST00000404529 772 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HDAC4P56524 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.38□□□□□ -1.87
HDAC4P56524 RPS20P5-201ENST00000434808 360 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 MTATP6P13-201ENST00000438531 667 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.38□□□□□ -1.87
HDAC4P56524 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HDAC4P56524 FGF7P6-202ENST00000451282 293 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.38□□□□□ -1.87
HDAC4P56524 RN7SL807P-201ENST00000470923 297 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 RPL30P5-201ENST00000494923 336 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.38□□□□□ -1.87
HDAC4P56524 RN7SKP258-201ENST00000517151 304 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HDAC4P56524 HIGD1AP1-201ENST00000550979 275 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 RPS3AP4-201ENST00000555161 764 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 HMGB1P33-201ENST00000563485 527 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.38□□□□□ -1.87
HDAC4P56524 AP001094.1-201ENST00000579805 193 ntBASIC3.38□□□□□ -1.87
HDAC4P56524 MIR2682-201ENST00000580305 110 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms