Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-253P-201ENST00000384730 105 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 RNU6-1242P-201ENST00000391052 103 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 MIR1289-2-201ENST00000408360 111 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 MTND1P21-201ENST00000412991 285 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.75□□□□□ -2.13
FOXA1P55317 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA1P55317 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA1P55317 PAXBP1P1-201ENST00000449315 447 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA1P55317 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA1P55317 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA1P55317 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA1P55317 MTND3P3-201ENST00000505004 126 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 AC010587.2-201ENST00000511727 448 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.75□□□□□ -2.13
FOXA1P55317 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.75□□□□□ -2.13
FOXA1P55317 AL391261.3-201ENST00000557194 520 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.75□□□□□ -2.13
FOXA1P55317 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.75□□□□□ -2.13
FOXA1P55317 MIR4509-3-201ENST00000578671 94 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 MIR4509-2-201ENST00000583920 94 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 MIR4769-201ENST00000584126 77 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 UBE2L4-201ENST00000587688 464 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 OR1M4P-201ENST00000589199 287 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA1P55317 AC091057.3-201ENST00000602684 733 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 RPP40P2-201ENST00000603596 712 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 RNU4-5P-201ENST00000607255 135 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 TUG1_2.1-201ENST00000614234 87 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 MIR4509-1-201ENST00000618224 94 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 AL158801.5-201ENST00000623123 465 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.75□□□□□ -2.13
FOXA1P55317 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.75□□□□□ -2.13
FOXA1P55317 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA1P55317 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
FOXA1P55317 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
FOXA1P55317 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
FOXA1P55317 MIR9-3-201ENST00000385084 90 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 U3.20-201ENST00000390909 217 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AL590084.2-201ENST00000401481 382 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.74□□□□□ -2.13
FOXA1P55317 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 AC092648.1-201ENST00000425870 423 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 GTF2IP20-201ENST00000431663 360 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 UBE2V1P13-201ENST00000436983 439 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 MTCO2P20-201ENST00000437339 673 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.74□□□□□ -2.13
FOXA1P55317 MTND2P39-201ENST00000457230 764 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 PPP1R2P5-201ENST00000457256 603 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 RPS20P22-201ENST00000473700 357 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.74□□□□□ -2.13
FOXA1P55317 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.74□□□□□ -2.13
FOXA1P55317 SUMO2P6-201ENST00000505273 288 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 MRPS36P2-201ENST00000512569 299 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 SNORA31.18-201ENST00000517043 134 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
FOXA1P55317 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 MIR4658-201ENST00000584344 65 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 HMGN2P15-201ENST00000585707 270 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.74□□□□□ -2.13
FOXA1P55317 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.74□□□□□ -2.13
FOXA1P55317 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.74□□□□□ -2.13
FOXA1P55317 AL161729.4-201ENST00000604650 476 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AC080013.3-201ENST00000606839 578 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AL133445.2-201ENST00000611191 527 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AC079395.3-201ENST00000615161 484 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AC010133.1-201ENST00000615809 842 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXA1P55317 AL031601.2-202ENST00000622650 282 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AC010608.3-201ENST00000625048 527 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 MTND1P37-201ENST00000636562 264 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AP003399.1-201ENST00000637534 361 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 ZNF355P-201ENST00000427301 3216 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 CENPCP1-201ENST00000533085 2578 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AP000776.1-201ENST00000530032 1663 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 AC009902.3-201ENST00000606235 2172 ntBASIC1.74□□□□□ -2.13
FOXA1P55317 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
FOXA1P55317 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
FOXA1P55317 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
FOXA1P55317 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
FOXA1P55317 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
FOXA1P55317 RNU4-92P-201ENST00000363783 136 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 RNU6-853P-201ENST00000364306 107 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 RNU6-432P-201ENST00000384196 109 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 RNU6-140P-201ENST00000384566 108 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 TXNP7-201ENST00000406296 293 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 RNU2-33P-201ENST00000410344 192 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.73□□□□□ -2.13
FOXA1P55317 UBE2FP1-201ENST00000416536 447 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXA1P55317 AL451054.2-201ENST00000420896 202 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.73□□□□□ -2.13
FOXA1P55317 AL354692.1-201ENST00000423044 315 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 ZNF863P-201ENST00000426746 417 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms