Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC117522.2-201ENST00000510049 657 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC074250.1-201ENST00000511117 192 ntBASIC2.69□□□□□ -1.98
CDX1P47902 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CDX1P47902 AC022447.1-201ENST00000515358 464 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNA5SP217-201ENST00000515959 91 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNU1-143P-201ENST00000516296 146 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNU6-430P-201ENST00000517078 107 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.69□□□□□ -1.98
CDX1P47902 MTCYBP20-201ENST00000524239 1129 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.69□□□□□ -1.98
CDX1P47902 AC007458.1-201ENST00000542812 373 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.69□□□□□ -1.98
CDX1P47902 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.69□□□□□ -1.98
CDX1P47902 AL391840.1-201ENST00000571144 367 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC024619.4-201ENST00000580924 316 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.69□□□□□ -1.98
CDX1P47902 MIR3611-201ENST00000584484 83 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.69□□□□□ -1.98
CDX1P47902 AC068790.2-201ENST00000602601 557 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AL670379.4-201ENST00000605279 254 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC097065.2-201ENST00000608159 533 ntBASIC2.69□□□□□ -1.98
CDX1P47902 U1.23-201ENST00000610293 146 ntBASIC2.69□□□□□ -1.98
CDX1P47902 RNU1-68P-201ENST00000615382 146 ntBASIC2.69□□□□□ -1.98
CDX1P47902 U1.39-201ENST00000621562 146 ntBASIC2.69□□□□□ -1.98
CDX1P47902 AC024940.5-201ENST00000622889 474 ntBASIC2.69□□□□□ -1.98
CDX1P47902 U6.114-201ENST00000636407 96 ntBASIC2.69□□□□□ -1.98
CDX1P47902 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CDX1P47902 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.69□□□□□ -1.98
CDX1P47902 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CDX1P47902 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.69□□□□□ -1.98
CDX1P47902 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CDX1P47902 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CDX1P47902 RNU6-181P-201ENST00000363225 107 ntBASIC2.68□□□□□ -1.98
CDX1P47902 RNU6-282P-201ENST00000365357 103 ntBASIC2.68□□□□□ -1.98
CDX1P47902 Y_RNA.359-201ENST00000365498 102 ntBASIC2.68□□□□□ -1.98
CDX1P47902 SNORA70.4-201ENST00000365509 134 ntBASIC2.68□□□□□ -1.98
CDX1P47902 U3.19-201ENST00000390893 196 ntBASIC2.68□□□□□ -1.98
CDX1P47902 CISD1P1-201ENST00000393907 327 ntBASIC2.68□□□□□ -1.98
CDX1P47902 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AL356057.2-201ENST00000403318 432 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.68□□□□□ -1.98
CDX1P47902 CDK8P2-201ENST00000415020 547 ntBASIC2.68□□□□□ -1.98
CDX1P47902 RPL32P35-201ENST00000415214 394 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC007560.1-201ENST00000426912 237 ntBASIC2.68□□□□□ -1.98
CDX1P47902 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.68□□□□□ -1.98
CDX1P47902 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.68□□□□□ -1.98
CDX1P47902 MTND4P32-201ENST00000437189 1237 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.68□□□□□ -1.98
CDX1P47902 BRK1P2-201ENST00000442875 223 ntBASIC2.68□□□□□ -1.98
CDX1P47902 RPL39P40-201ENST00000445481 146 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.68□□□□□ -1.98
CDX1P47902 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.68□□□□□ -1.98
CDX1P47902 RPL27AP5-201ENST00000469428 449 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC025518.1-201ENST00000479856 347 ntBASIC2.68□□□□□ -1.98
CDX1P47902 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.68□□□□□ -1.98
CDX1P47902 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.68□□□□□ -1.98
CDX1P47902 RBBP4P6-201ENST00000508098 202 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC079140.3-201ENST00000511111 550 ntBASIC2.68□□□□□ -1.98
CDX1P47902 MRPS36P2-201ENST00000512569 299 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.68□□□□□ -1.98
CDX1P47902 RN7SKP298-201ENST00000515950 94 ntBASIC2.68□□□□□ -1.98
CDX1P47902 RNU6-572P-201ENST00000516724 80 ntBASIC2.68□□□□□ -1.98
CDX1P47902 RNU6-445P-201ENST00000516949 107 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC107934.2-201ENST00000518653 310 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.68□□□□□ -1.98
CDX1P47902 AL157871.3-201ENST00000557231 293 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.68□□□□□ -1.98
CDX1P47902 AC021739.1-201ENST00000559631 174 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC010546.1-201ENST00000569391 485 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.68□□□□□ -1.98
CDX1P47902 MIR4782-201ENST00000577987 79 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AL451007.1-201ENST00000595491 289 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC010620.2-201ENST00000600135 313 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC073648.5-201ENST00000603502 305 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC007179.3-201ENST00000604976 235 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC126118.1-201ENST00000607744 628 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC005332.10-201ENST00000612725 619 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC091834.1-201ENST00000614543 472 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AC138649.3-201ENST00000622154 254 ntBASIC2.68□□□□□ -1.98
CDX1P47902 AL157786.1-207ENST00000627771 695 ntBASIC2.68□□□□□ -1.98
CDX1P47902 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.68□□□□□ -1.98
CDX1P47902 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
CDX1P47902 AC103710.2-202ENST00000641454 2853 ntBASIC2.68□□□□□ -1.98
CDX1P47902 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
CDX1P47902 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CDX1P47902 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CDX1P47902 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CDX1P47902 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CDX1P47902 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CDX1P47902 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CDX1P47902 MIR208A-201ENST00000362287 71 ntBASIC2.67□□□□□ -1.98
CDX1P47902 Y_RNA.33-201ENST00000362591 102 ntBASIC2.67□□□□□ -1.98
CDX1P47902 Y_RNA.51-201ENST00000362725 102 ntBASIC2.67□□□□□ -1.98
CDX1P47902 RNA5SP267-201ENST00000364893 126 ntBASIC2.67□□□□□ -1.98
CDX1P47902 RNU6-61P-201ENST00000365528 109 ntBASIC2.67□□□□□ -1.98
CDX1P47902 RNU6-108P-201ENST00000365558 107 ntBASIC2.67□□□□□ -1.98
CDX1P47902 MIR490-201ENST00000384865 128 ntBASIC2.67□□□□□ -1.98
CDX1P47902 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.67□□□□□ -1.98
CDX1P47902 AC063979.1-201ENST00000415539 377 ntBASIC2.67□□□□□ -1.98
CDX1P47902 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms