Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNU6-964P-201ENST00000516524 69 ntBASIC0.68□□□□□ -2.3
COL6A3P12111 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A3P12111 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A3P12111 HMGN2P10-201ENST00000448085 265 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 KLRA1P-201ENST00000503499 986 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 AL627230.6-201ENST00000611129 280 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 AP003485.1-201ENST00000625093 753 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 SNORD56-201ENST00000413522 71 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 AC239798.3-201ENST00000454459 408 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 MIR4716-201ENST00000579628 84 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
COL6A3P12111 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
COL6A3P12111 RNU6-185P-201ENST00000384421 107 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
COL6A3P12111 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC0.67□□□□□ -2.3
COL6A3P12111 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A3P12111 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
COL6A3P12111 RNU6-889P-201ENST00000517189 103 ntBASIC0.66□□□□□ -2.3
COL6A3P12111 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
COL6A3P12111 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC0.66□□□□□ -2.3
COL6A3P12111 AC008269.2-201ENST00000561915 1105 ntBASIC0.66□□□□□ -2.3
COL6A3P12111 AC005410.1-202ENST00000460347 485 ntBASIC0.66□□□□□ -2.3
COL6A3P12111 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC0.66□□□□□ -2.3
COL6A3P12111 HMGB3P3-201ENST00000510526 400 ntBASIC0.66□□□□□ -2.3
COL6A3P12111 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.66□□□□□ -2.3
COL6A3P12111 MIR101-1-201ENST00000362265 75 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.65□□□□□ -2.3
COL6A3P12111 CCNB1IP1P3-201ENST00000454702 829 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 RPS27P26-201ENST00000494583 239 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.65□□□□□ -2.3
COL6A3P12111 AC004987.4-201ENST00000603383 338 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 AC024060.1-201ENST00000607052 494 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 AC106052.1-201ENST00000608029 497 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 AC090425.2-201ENST00000608818 501 ntBASIC0.65□□□□□ -2.3
COL6A3P12111 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.65□□□□□ -2.31
COL6A3P12111 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC0.65□□□□□ -2.31
COL6A3P12111 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC0.65□□□□□ -2.31
COL6A3P12111 AC048346.1-201ENST00000510247 144 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.31
COL6A3P12111 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
COL6A3P12111 AC008749.1-201ENST00000597650 306 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AC009974.1-201ENST00000608881 455 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AC004908.2-201ENST00000609090 574 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 RNU6-1263P-201ENST00000384601 106 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 RNU4ATAC16P-201ENST00000408512 126 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 RPL37P21-201ENST00000435890 276 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AC004383.1-201ENST00000438135 289 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AC010099.1-201ENST00000455434 375 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.65□□□□□ -2.31
COL6A3P12111 RPL30P14-201ENST00000482744 348 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.65□□□□□ -2.31
COL6A3P12111 RNU6-1004P-201ENST00000516584 111 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AP003484.1-201ENST00000530974 250 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 AC006065.5-201ENST00000623427 349 ntBASIC0.65□□□□□ -2.31
COL6A3P12111 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
COL6A3P12111 ZBTB8OSP1-201ENST00000342688 498 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 Y_RNA.86-201ENST00000363020 111 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 RNU4-42P-201ENST00000364738 142 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 RNU4-78P-201ENST00000410940 126 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 AC092628.1-201ENST00000436250 252 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.64□□□□□ -2.31
COL6A3P12111 RNU4-77P-201ENST00000516692 156 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 SNORA76.2-201ENST00000517095 137 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 OR5B19P-201ENST00000531766 928 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 AC136932.1-201ENST00000574771 208 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.64□□□□□ -2.31
COL6A3P12111 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.64□□□□□ -2.31
COL6A3P12111 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.64□□□□□ -2.31
COL6A3P12111 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.64□□□□□ -2.31
COL6A3P12111 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.64□□□□□ -2.31
COL6A3P12111 AC090116.1-201ENST00000615679 446 ntBASIC0.64□□□□□ -2.31
COL6A3P12111 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.64□□□□□ -2.31
COL6A3P12111 Y_RNA.181-201ENST00000363872 101 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-119P-201ENST00000364882 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-1320P-201ENST00000390838 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-1269P-201ENST00000391139 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 MTND2P2-201ENST00000434633 945 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-599P-201ENST00000459383 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-1193P-201ENST00000459461 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC0.63□□□□□ -2.31
COL6A3P12111 HMGB3P17-201ENST00000504195 649 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC109927.2-201ENST00000506416 303 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC084757.1-201ENST00000559987 490 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC022662.1-201ENST00000580252 331 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 CLIC4P2-201ENST00000601934 717 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 BNIP3P31-201ENST00000604515 566 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC021646.1-201ENST00000605469 484 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC004832.4-201ENST00000608952 331 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.63□□□□□ -2.31
COL6A3P12111 AC073569.3-201ENST00000619055 682 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-368P-201ENST00000620928 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 RNU6-538P-201ENST00000622329 107 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
COL6A3P12111 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.63□□□□□ -2.31
COL6A3P12111 AC244453.4-201ENST00000419150 388 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC246680.2-201ENST00000422106 389 ntBASIC0.63□□□□□ -2.31
COL6A3P12111 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.63□□□□□ -2.31
COL6A3P12111 RPS15AP5-201ENST00000436276 388 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms