Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AL592221.1-201ENST00000605266 382 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 AL136370.1-201ENST00000608166 691 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 AC087241.4-201ENST00000612441 480 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 SDR42E1P2-201ENST00000614861 481 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 AC013470.4-201ENST00000619978 986 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 PCMTD1P7-201ENST00000634506 357 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CPSF4O95639 AC022336.2-201ENST00000568966 2538 ntBASIC1.7□□□□□ -2.14
CPSF4O95639 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC1.7□□□□□ -2.14
CPSF4O95639 U8.2-201ENST00000363156 134 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 RNU6-140P-201ENST00000384566 108 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CPSF4O95639 GSTA9P-201ENST00000406231 611 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 RNU2-33P-201ENST00000410344 192 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AL445669.1-201ENST00000426743 755 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 ZNF863P-201ENST00000426746 417 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.69□□□□□ -2.14
CPSF4O95639 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 GTF2IP20-201ENST00000431663 360 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.69□□□□□ -2.14
CPSF4O95639 RPL12P25-201ENST00000455592 494 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 DUXAP8-207ENST00000456786 622 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 PPP1R2P5-201ENST00000457256 603 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.69□□□□□ -2.14
CPSF4O95639 AC087588.1-201ENST00000462203 316 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CPSF4O95639 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.69□□□□□ -2.14
CPSF4O95639 RPL21P99-201ENST00000480369 423 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 RPS29P20-201ENST00000489592 171 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC034222.1-201ENST00000494052 532 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.69□□□□□ -2.14
CPSF4O95639 EIF4EP3-201ENST00000498782 656 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC091951.3-201ENST00000504093 246 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.69□□□□□ -2.14
CPSF4O95639 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.69□□□□□ -2.14
CPSF4O95639 RNA5SP216-201ENST00000516111 123 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 AC007375.1-201ENST00000554513 578 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.69□□□□□ -2.14
CPSF4O95639 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 MTND1P8-201ENST00000571424 950 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC024614.2-201ENST00000577584 372 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 MIR4648-201ENST00000580107 72 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 HMGN2P15-201ENST00000585707 270 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.69□□□□□ -2.14
CPSF4O95639 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC1.69□□□□□ -2.14
CPSF4O95639 VN1R82P-201ENST00000601481 356 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 AC136601.2-201ENST00000604356 474 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.69□□□□□ -2.14
CPSF4O95639 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.69□□□□□ -2.14
CPSF4O95639 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CPSF4O95639 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CPSF4O95639 AL109809.4-201ENST00000603520 2185 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
CPSF4O95639 RNU6-223P-201ENST00000362830 107 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CPSF4O95639 SNORA6-201ENST00000384033 151 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AL445529.1-201ENST00000398713 389 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 RN7SKP266-201ENST00000410232 287 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AL359704.1-201ENST00000411586 781 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.68□□□□□ -2.14
CPSF4O95639 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.68□□□□□ -2.14
CPSF4O95639 AL445687.1-201ENST00000439946 251 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 USP9YP15-201ENST00000442391 422 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 MTCO3P45-201ENST00000443036 613 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 RNU7-26P-201ENST00000458980 63 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.68□□□□□ -2.14
CPSF4O95639 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.68□□□□□ -2.14
CPSF4O95639 AC010486.1-201ENST00000511793 424 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.68□□□□□ -2.14
CPSF4O95639 AC107393.1-201ENST00000512403 346 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 MRPS36P2-201ENST00000512569 299 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.68□□□□□ -2.14
CPSF4O95639 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CPSF4O95639 AC119751.5-201ENST00000514077 770 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 RNA5SP291-201ENST00000517222 105 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 HSPE1P18-201ENST00000517602 280 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.68□□□□□ -2.14
CPSF4O95639 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.68□□□□□ -2.14
CPSF4O95639 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
CPSF4O95639 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.68□□□□□ -2.14
CPSF4O95639 GLYCAM1-201ENST00000546596 285 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.68□□□□□ -2.14
CPSF4O95639 MIR3618-201ENST00000580330 88 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 MIR3117-201ENST00000584034 78 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 BNIP3P39-201ENST00000601077 554 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AC021171.1-201ENST00000603137 706 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 RNU6-88P-201ENST00000606801 100 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AC097468.3-201ENST00000607956 456 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.68□□□□□ -2.14
CPSF4O95639 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.68□□□□□ -2.14
CPSF4O95639 AC112204.3-201ENST00000623822 332 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AL356596.1-201ENST00000624230 379 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.68□□□□□ -2.14
CPSF4O95639 AP003399.1-201ENST00000637534 361 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 MTND5P33-201ENST00000571250 1450 ntBASIC1.68□□□□□ -2.14
CPSF4O95639 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms