Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC006116.10-201ENST00000591836 581 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AC006254.3-201ENST00000603353 884 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AL031176.1-201ENST00000604554 466 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.03□□□□□ -1.92
LMX1BO60663 TUG1_2.1-201ENST00000614234 87 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AL133216.2-202ENST00000634512 349 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.03□□□□□ -1.92
LMX1BO60663 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.03□□□□□ -1.92
LMX1BO60663 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.03□□□□□ -1.93
LMX1BO60663 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
LMX1BO60663 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
LMX1BO60663 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.03□□□□□ -1.93
LMX1BO60663 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 AC244517.1-201ENST00000606030 2086 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 MTND4P14-201ENST00000435799 1354 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.02□□□□□ -1.93
LMX1BO60663 AC073343.1-201ENST00000328239 651 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RNU6-1249P-201ENST00000363237 111 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RNA5SP167-201ENST00000365461 116 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 SMIM11P1-201ENST00000369586 178 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.02□□□□□ -1.93
LMX1BO60663 RNU6-712P-201ENST00000410558 100 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RNA5SP120-201ENST00000410900 112 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 NDUFB4P5-201ENST00000415445 361 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 SSXP9-201ENST00000417503 292 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.02□□□□□ -1.93
LMX1BO60663 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.02□□□□□ -1.93
LMX1BO60663 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.02□□□□□ -1.93
LMX1BO60663 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.02□□□□□ -1.93
LMX1BO60663 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.02□□□□□ -1.93
LMX1BO60663 RPL36AP6-201ENST00000435770 321 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RPL35AP22-201ENST00000436855 335 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AL357552.1-201ENST00000445254 415 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.02□□□□□ -1.93
LMX1BO60663 AC020550.1-201ENST00000447385 163 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AL162389.1-201ENST00000449233 177 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AC233279.1-201ENST00000455300 423 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 SNORD108-201ENST00000459332 71 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RNU7-66P-201ENST00000459469 62 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AC010401.1-201ENST00000463867 348 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RPL9P32-201ENST00000464118 620 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.02□□□□□ -1.93
LMX1BO60663 RN7SL594P-201ENST00000470590 287 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RPL21P103-201ENST00000479921 488 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AP001086.1-201ENST00000494882 321 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AC098591.2-201ENST00000510152 315 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 Y_RNA.691-201ENST00000516611 103 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RNU6-1092P-201ENST00000516955 87 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RN7SKP60-201ENST00000516985 239 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 RNU4-60P-201ENST00000517239 135 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 AC109635.4-202ENST00000531666 412 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.02□□□□□ -1.93
LMX1BO60663 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.02□□□□□ -1.93
LMX1BO60663 BNIP3P6-201ENST00000549284 499 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AL603758.1-201ENST00000618654 241 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AL353748.2-201ENST00000622148 471 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 AP003400.5-201ENST00000624827 617 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.02□□□□□ -1.93
LMX1BO60663 TPTEP1-208ENST00000636884 213 ntBASIC3.02□□□□□ -1.93
LMX1BO60663 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.02□□□□□ -1.93
LMX1BO60663 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LMX1BO60663 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
LMX1BO60663 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
LMX1BO60663 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.01□□□□□ -1.93
LMX1BO60663 RNU6-1284P-201ENST00000363701 100 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LMX1BO60663 SNORA32.2-201ENST00000384049 122 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 Y_RNA.576-201ENST00000384781 102 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RNU6-328P-201ENST00000390887 106 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RNU6-510P-201ENST00000391239 108 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AL359634.1-202ENST00000404721 284 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RNU2-29P-201ENST00000410423 189 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RPL21P24-201ENST00000413752 448 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.01□□□□□ -1.93
LMX1BO60663 UBE2FP1-201ENST00000416536 447 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.01□□□□□ -1.93
LMX1BO60663 CKS1BP5-201ENST00000434172 273 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AC024082.2-201ENST00000434771 238 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AC090774.1-201ENST00000435925 246 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AL590639.1-201ENST00000456484 337 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.01□□□□□ -1.93
LMX1BO60663 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.01□□□□□ -1.93
LMX1BO60663 AC010631.1-201ENST00000474150 156 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RPL21P99-201ENST00000480369 423 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 FAM206BP-201ENST00000510179 541 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 Vault.1-201ENST00000516474 102 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RNU6-1231P-201ENST00000517185 103 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RANP9-201ENST00000519957 271 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 RPL7P20-201ENST00000520308 745 ntBASIC3.01□□□□□ -1.93
LMX1BO60663 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.01□□□□□ -1.93
LMX1BO60663 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms