Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 MTND2P26-201ENST00000528255 1029 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC005498.1-201ENST00000592125 465 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC243960.4-201ENST00000600532 288 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC88BA6NC98 AC133963.2-201ENST00000513686 578 ntBASIC1.17□□□□□ -2.22
CCDC88BA6NC98 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC88BA6NC98 MIR8087-201ENST00000612745 78 ntBASIC1.17□□□□□ -2.22
CCDC88BA6NC98 AL773524.1-201ENST00000614065 229 ntBASIC1.17□□□□□ -2.22
CCDC88BA6NC98 AL136313.1-201ENST00000624804 202 ntBASIC1.17□□□□□ -2.22
CCDC88BA6NC98 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.17□□□□□ -2.22
CCDC88BA6NC98 RNA5SP276-201ENST00000362580 94 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 RNU6-939P-201ENST00000384634 107 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 TATDN1P1-201ENST00000414123 891 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 RPS20P20-201ENST00000460498 340 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 AC104806.1-201ENST00000508720 308 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 AC067942.3-201ENST00000512025 362 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 AC118273.2-201ENST00000532092 465 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 AP001485.1-201ENST00000604799 199 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 AC091925.1-201ENST00000623204 462 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 MIR7515-201ENST00000637837 67 ntBASIC1.16□□□□□ -2.22
CCDC88BA6NC98 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.15□□□□□ -2.22
CCDC88BA6NC98 RNU6-942P-201ENST00000363002 107 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
CCDC88BA6NC98 RNU6-317P-201ENST00000384031 107 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 RNU6-1235P-201ENST00000384559 107 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
CCDC88BA6NC98 U3.29-201ENST00000391296 212 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 BTF3L4P2-201ENST00000392798 346 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.15□□□□□ -2.23
CCDC88BA6NC98 AL365496.1-201ENST00000426885 215 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 JTBP1-201ENST00000441314 247 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 MTND2P8-201ENST00000450555 1025 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 BX248409.1-201ENST00000455497 255 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 RNU6-498P-201ENST00000459468 107 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC88BA6NC98 VN1R81P-201ENST00000602085 372 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 GAS5-AS1-201ENST00000602767 694 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 AL592148.2-201ENST00000612210 372 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 MTND5P9-201ENST00000503854 1755 ntBASIC1.15□□□□□ -2.23
CCDC88BA6NC98 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
CCDC88BA6NC98 MIR767-201ENST00000390228 109 ntBASIC1.14□□□□□ -2.23
CCDC88BA6NC98 MTCO3P12-201ENST00000416718 547 ntBASIC1.14□□□□□ -2.23
CCDC88BA6NC98 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC88BA6NC98 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC88BA6NC98 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88BA6NC98 AC093752.1-206ENST00000511823 336 ntBASIC1.14□□□□□ -2.23
CCDC88BA6NC98 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC88BA6NC98 AC015726.3-201ENST00000624501 418 ntBASIC1.14□□□□□ -2.23
CCDC88BA6NC98 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 ZNF965P-201ENST00000432501 817 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 Z77249.1-201ENST00000444622 1175 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC108157.1-201ENST00000510511 539 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC008834.1-201ENST00000511612 175 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC107954.1-201ENST00000565906 727 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 MIR5571-201ENST00000577998 113 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AL009028.1-201ENST00000604895 802 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC021646.1-201ENST00000605469 484 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC004852.3-201ENST00000614131 326 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 SDAD1P2-201ENST00000441308 2028 ntBASIC1.13□□□□□ -2.23
CCDC88BA6NC98 AC087359.1-201ENST00000508335 1740 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 RN7SKP158-201ENST00000410453 326 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC016691.1-201ENST00000441321 413 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 C1DP3-201ENST00000455013 423 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AP003072.2-201ENST00000527756 676 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC021749.1-201ENST00000604322 607 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 MIR6866-201ENST00000638146 69 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 RNU6-532P-201ENST00000384318 107 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 RPS3AP24-201ENST00000407896 734 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC018630.2-202ENST00000422992 927 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC092628.1-201ENST00000436250 252 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AC115085.1-201ENST00000588924 229 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 DUSP12P1-201ENST00000612874 516 ntBASIC1.12□□□□□ -2.23
CCDC88BA6NC98 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC88BA6NC98 RNU6-16P-201ENST00000384385 107 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 RN7SKP200-201ENST00000410564 320 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AL645638.1-201ENST00000440519 361 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms