Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AK3P2-201ENST00000507976 429 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RN7SKP260-201ENST00000516907 149 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-612P-201ENST00000516909 102 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.706-201ENST00000516933 99 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC109479.2-201ENST00000517842 174 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 IGLV2-28-201ENST00000520681 304 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 MIR4659A-201ENST00000580269 81 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 MIR4443-201ENST00000585052 53 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC072026.1-201ENST00000605023 201 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RNA5SP108-201ENST00000605921 117 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC126915.2-201ENST00000610957 190 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.81-201ENST00000362997 102 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.292-201ENST00000364904 97 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 RNY4P28-201ENST00000365281 93 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-926P-201ENST00000384075 107 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 MIR1286-201ENST00000408112 78 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC091390.3-201ENST00000426478 338 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 RPS6P12-201ENST00000432491 726 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AL389915.2-201ENST00000454576 441 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 RN7SL517P-201ENST00000462240 305 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 COPS8P2-201ENST00000473228 627 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 RPL7P47-201ENST00000497299 556 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 HMGB3P16-201ENST00000508037 287 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 RN7SKP272-201ENST00000516988 232 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC005868.1-201ENST00000536421 331 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC025884.1-201ENST00000556034 378 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AL590240.4-201ENST00000616908 390 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AL360181.4-201ENST00000621752 134 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 BX322639.1-202ENST00000423987 2213 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 AC116096.1-201ENST00000566804 2314 ntBASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
HIF3AQ9Y2N7 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 RNU4-90P-201ENST00000362773 141 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.123-201ENST00000363338 102 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.398-201ENST00000383952 99 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 SNORD78.2-201ENST00000391076 69 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 H2AFZP5-201ENST00000446960 382 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 RPL23AP81-201ENST00000455252 467 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 RPL23AP45-201ENST00000476406 468 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 ATP5LP3-201ENST00000514223 304 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 MIR3144-201ENST00000579460 79 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 MIR4472-2-201ENST00000582069 67 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AC011447.4-201ENST00000587562 111 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 RPL23AP78-201ENST00000599928 470 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AL512624.1-201ENST00000613638 469 ntBASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
HIF3AQ9Y2N7 AC015813.6-201ENST00000624409 5808 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms